Mike Jiang
| Snapshot Date: 2025-11-27 13:40 -0500 (Thu, 27 Nov 2025) |
| git_url: https://git.bioconductor.org/packages/flowViz |
| git_branch: devel |
| git_last_commit: 0ebf1eb |
| git_last_commit_date: 2025-10-29 09:58:41 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-11-28 11:38 -0500 (Fri, 28 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4866 |
| lconway | macOS 12.7.6 Monterey | x86_64 | R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" | 4614 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4571 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 762/2328 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowViz 1.75.0 (landing page) Mike Jiang
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | TIMEOUT | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the flowViz package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowViz.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: flowViz |
| Version: 1.75.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:flowViz.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings flowViz_1.75.0.tar.gz |
| StartedAt: 2025-11-27 23:08:28 -0500 (Thu, 27 Nov 2025) |
| EndedAt: 2025-11-27 23:48:31 -0500 (Thu, 27 Nov 2025) |
| EllapsedTime: 2402.8 seconds |
| RetCode: None |
| Status: TIMEOUT |
| CheckDir: flowViz.Rcheck |
| Warnings: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:flowViz.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings flowViz_1.75.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/flowViz.Rcheck’
* using R Under development (unstable) (2025-10-21 r88958)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowViz/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowViz’ version ‘1.75.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowViz’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
‘flowCore’ ‘lattice’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ...
flowViz.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL flowViz ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library’ * installing *source* package ‘flowViz’ ... ** this is package ‘flowViz’ version ‘1.75.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘densityplot’ with signature ‘x="formula",data="view"’: no definition for class “view” in method for ‘densityplot’ with signature ‘x="formula",data="ncdfFlowSet"’: no definition for class “ncdfFlowSet” in method for ‘densityplot’ with signature ‘x="formula",data="ncdfFlowList"’: no definition for class “ncdfFlowList” in method for ‘histogram’ with signature ‘x="formula",data="ncdfFlowSet"’: no definition for class “ncdfFlowSet” in method for ‘histogram’ with signature ‘x="formula",data="ncdfFlowList"’: no definition for class “ncdfFlowList” in method for ‘glines’ with signature ‘x="norm2Filter",data="ANY"’: no definition for class “norm2Filter” in method for ‘glines’ with signature ‘x="norm2Filter",data="logicalFilterResult"’: no definition for class “norm2Filter” in method for ‘glines’ with signature ‘x="norm2Filter",data="flowFrame"’: no definition for class “norm2Filter” in method for ‘glpoints’ with signature ‘x="norm2Filter",data="flowFrame",channels="character"’: no definition for class “norm2Filter” in method for ‘glpolygon’ with signature ‘x="norm2Filter",data="ANY"’: no definition for class “norm2Filter” in method for ‘glpolygon’ with signature ‘x="norm2Filter",data="logicalFilterResult"’: no definition for class “norm2Filter” in method for ‘glpolygon’ with signature ‘x="norm2Filter",data="flowFrame"’: no definition for class “norm2Filter” in method for ‘gpoints’ with signature ‘x="norm2Filter",data="flowFrame",channels="character"’: no definition for class “norm2Filter” in method for ‘gpolygon’ with signature ‘x="norm2Filter",data="ANY"’: no definition for class “norm2Filter” in method for ‘gpolygon’ with signature ‘x="norm2Filter",data="logicalFilterResult"’: no definition for class “norm2Filter” in method for ‘gpolygon’ with signature ‘x="norm2Filter",data="flowFrame"’: no definition for class “norm2Filter” in method for ‘xyplot’ with signature ‘x="formula",data="view"’: no definition for class “view” in method for ‘xyplot’ with signature ‘x="view",data="missing"’: no definition for class “view” in method for ‘xyplot’ with signature ‘x="formula",data="gateView"’: no definition for class “gateView” in method for ‘xyplot’ with signature ‘x="formula",data="ncdfFlowSet"’: no definition for class “ncdfFlowSet” in method for ‘xyplot’ with signature ‘x="formula",data="ncdfFlowList"’: no definition for class “ncdfFlowList” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flowViz)