| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-11-15 11:35 -0500 (Sat, 15 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4826 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4561 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1198/2325 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mCSEA 1.31.1 (landing page) Jordi Martorell-Marugán
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the mCSEA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mCSEA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: mCSEA |
| Version: 1.31.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mCSEA |
| StartedAt: 2025-11-14 16:51:50 -0500 (Fri, 14 Nov 2025) |
| EndedAt: 2025-11-14 16:52:54 -0500 (Fri, 14 Nov 2025) |
| EllapsedTime: 64.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mCSEA
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* checking for file ‘mCSEA/DESCRIPTION’ ... OK
* preparing ‘mCSEA’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘mCSEA.Rmd’ using rmarkdown
Quitting from mCSEA.Rmd:283-287 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! 'bands' must be an object of class 'data.frame'
---
Backtrace:
x
1. \-mCSEA::mCSEAPlot(...)
2. \-Gviz::IdeogramTrack(...)
3. \-methods::new(...)
4. +-methods::initialize(value, ...)
5. \-Gviz::initialize(value, ...)
6. \-Gviz (local) .local(.Object, ...)
7. \-Gviz:::.checkClass(bands, "data.frame")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mCSEA.Rmd' failed with diagnostics:
'bands' must be an object of class 'data.frame'
--- failed re-building ‘mCSEA.Rmd’
SUMMARY: processing the following file failed:
‘mCSEA.Rmd’
Error: Vignette re-building failed.
Execution halted