| Back to Build/check report for BioC 3.24: simplified long |
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This page was generated on 2026-05-21 11:33 -0400 (Thu, 21 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4936 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1278/2378 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| methodical 1.9.0 (landing page) Richard Heery
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for methodical in R Universe. | ||||||||||||||
|
To the developers/maintainers of the methodical package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/methodical.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: methodical |
| Version: 1.9.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 methodical |
| StartedAt: 2026-05-20 18:46:41 -0400 (Wed, 20 May 2026) |
| EndedAt: 2026-05-20 18:49:18 -0400 (Wed, 20 May 2026) |
| EllapsedTime: 157.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 methodical
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* checking for file ‘methodical/DESCRIPTION’ ... OK
* preparing ‘methodical’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘calculating_methylation_transcription_correlations.Rmd’ using rmarkdown
Quitting from calculating_methylation_transcription_correlations.Rmd:64-91 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Public
Resource removed on: 2026-04-28
---
Backtrace:
▆
1. ├─AnnotationHub()[["AH75119"]]
2. └─AnnotationHub()[["AH75119"]]
3. └─AnnotationHub (local) .local(x, i, j = j, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'calculating_methylation_transcription_correlations.Rmd' failed with diagnostics:
Public
Resource removed on: 2026-04-28
--- failed re-building ‘calculating_methylation_transcription_correlations.Rmd’
--- re-building ‘working_with_meth_rses.Rmd’ using rmarkdown
trying URL 'http://hgdownload.soe.ucsc.edu/goldenPath/hg19/chromosomes/chr11.fa.gz'
Content type 'application/x-gzip' length 42966674 bytes (41.0 MB)
==================================================
downloaded 41.0 MB
--- finished re-building ‘working_with_meth_rses.Rmd’
SUMMARY: processing the following file failed:
‘calculating_methylation_transcription_correlations.Rmd’
Error: Vignette re-building failed.
Execution halted