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This page was generated on 2025-08-06 13:55 -0400 (Wed, 06 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4813
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4550
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4592
kjohnson3macOS 13.7.1 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4534
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1715/2315HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
recount3 1.19.2  (landing page)
Leonardo Collado-Torres
Snapshot Date: 2025-08-05 13:25 -0400 (Tue, 05 Aug 2025)
git_url: https://git.bioconductor.org/packages/recount3
git_branch: devel
git_last_commit: 05c6261
git_last_commit_date: 2025-05-15 10:36:03 -0400 (Thu, 15 May 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


BUILD results for recount3 on lconway

To the developers/maintainers of the recount3 package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/recount3.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: recount3
Version: 1.19.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data recount3
StartedAt: 2025-08-05 18:14:25 -0400 (Tue, 05 Aug 2025)
EndedAt: 2025-08-05 18:15:26 -0400 (Tue, 05 Aug 2025)
EllapsedTime: 61.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data recount3
###
##############################################################################
##############################################################################


* checking for file ‘recount3/DESCRIPTION’ ... OK
* preparing ‘recount3’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘recount3-quickstart.Rmd’ using rmarkdown

Quitting from recount3-quickstart.Rmd:159-175 [quick_example]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! 'recount3_url' is not a valid supported URL since it's missing the URL/<organism>/homes_index text file or 'recount3_url' is not an existing directory in your file system.
---
Backtrace:
    ▆
 1. └─recount3::available_projects()
 2.   ├─recount3::available_samples(...)
 3.   │ └─base::file.path(...)
 4.   └─recount3::project_homes(organism = organism, recount3_url = recount3_url)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'recount3-quickstart.Rmd' failed with diagnostics:
'recount3_url' is not a valid supported URL since it's missing the URL/<organism>/homes_index text file or 'recount3_url' is not an existing directory in your file system.
--- failed re-building ‘recount3-quickstart.Rmd’

SUMMARY: processing the following file failed:
  ‘recount3-quickstart.Rmd’

Error: Vignette re-building failed.
Execution halted