| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-30 12:37 -0400 (Thu, 30 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4901 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4691 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4637 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1920/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| scDotPlot 1.4.0 (landing page) Benjamin I Laufer
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the scDotPlot package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scDotPlot.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: scDotPlot |
| Version: 1.4.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scDotPlot |
| StartedAt: 2025-10-30 00:04:00 -0400 (Thu, 30 Oct 2025) |
| EndedAt: 2025-10-30 00:04:38 -0400 (Thu, 30 Oct 2025) |
| EllapsedTime: 38.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scDotPlot
###
##############################################################################
##############################################################################
* checking for file ‘scDotPlot/DESCRIPTION’ ... OK
* preparing ‘scDotPlot’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘scDotPlot.Rmd’ using rmarkdown
Quitting from scDotPlot.Rmd:91-104 [scePlot1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `adjust_hclust_tip.edge.len()`:
! could not find function "adjust_hclust_tip.edge.len"
---
Backtrace:
▆
1. ├─scDotPlot::scDotPlot(...)
2. ├─scDotPlot:::scDotPlot.SingleCellExperiment(...)
3. │ └─... %>% ...
4. ├─scDotPlot:::scDotPlot.default(...)
5. │ └─dotPlot %>% ...
6. ├─scDotPlot:::.annotateDotPlot(...)
7. │ └─... %>% ggtree::ggtree(branch.length = "none")
8. └─ggtree::ggtree(., branch.length = "none")
9. ├─base::suppressWarnings(...)
10. │ └─base::withCallingHandlers(...)
11. ├─ggplot2::ggplot(...)
12. └─ggplot2:::ggplot.default(...)
13. ├─ggplot2::fortify(data, ...)
14. └─ggtree:::fortify.hclust(data, ...)
15. └─ggtree:::fortify.phylo(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'scDotPlot.Rmd' failed with diagnostics:
could not find function "adjust_hclust_tip.edge.len"
--- failed re-building ‘scDotPlot.Rmd’
SUMMARY: processing the following file failed:
‘scDotPlot.Rmd’
Error: Vignette re-building failed.
Execution halted