Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-08-09 12:10 -0400 (Sat, 09 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4553 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2269/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
velociraptor 1.19.1 (landing page) Kevin Rue-Albrecht
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
To the developers/maintainers of the velociraptor package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/velociraptor.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: velociraptor |
Version: 1.19.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor |
StartedAt: 2025-08-08 17:56:00 -0400 (Fri, 08 Aug 2025) |
EndedAt: 2025-08-08 17:56:23 -0400 (Fri, 08 Aug 2025) |
EllapsedTime: 22.3 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor ### ############################################################################## ############################################################################## * checking for file ‘velociraptor/DESCRIPTION’ ... OK * preparing ‘velociraptor’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘velociraptor.Rmd’ using rmarkdown Quitting from velociraptor.Rmd:75-82 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `py_module_import()`: ! OSError: Could not find/load shared object file Run `reticulate::py_last_error()` for details. --- Backtrace: ▆ 1. ├─velociraptor::scvelo(...) 2. └─velociraptor::scvelo(...) 3. └─velociraptor (local) .local(x, ...) 4. ├─methods::callNextMethod(x, ..., sf.X = sf.X, dimred = dimred) 5. │ └─base::eval(call, callEnv) 6. │ └─base::eval(call, callEnv) 7. └─velociraptor (local) .nextMethod(x, ..., sf.X = sf.X, dimred = dimred) 8. └─velociraptor (local) .local(x, ...) 9. └─velociraptor:::.scvelo(...) 10. └─basilisk::basiliskRun(...) 11. └─velociraptor (local) fun(...) 12. └─reticulate::import("scvelo") 13. └─reticulate:::py_module_import(module, convert = convert) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'velociraptor.Rmd' failed with diagnostics: OSError: Could not find/load shared object file Run `reticulate::py_last_error()` for details. --- failed re-building ‘velociraptor.Rmd’ SUMMARY: processing the following file failed: ‘velociraptor.Rmd’ Error: Vignette re-building failed. Execution halted