| Back to Long Tests report for BioC 3.22 |
This page was generated on 2025-08-23 23:55 -0400 (Sat, 23 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4821 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4599 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 5/29 | Hostname | OS / Arch | CHECK | |||||||
| biodbChebi 1.15.1 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | |||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.15.1 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz |
| StartedAt: 2025-08-23 16:01:12 -0400 (Sat, 23 Aug 2025) |
| EndedAt: 2025-08-23 16:02:46 -0400 (Sat, 23 Aug 2025) |
| EllapsedTime: 94.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-08-23 16:01:44.900][biodb::testContext]
biodb.INFO [2025-08-23 16:01:44.902][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-23 16:01:44.904][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-08-23 16:01:44.905][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-23 16:01:44.906][biodb::testContext]
biodb.INFO [2025-08-23 16:01:44.912][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-08-23 16:01:44.914][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-08-23 16:01:44.922][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-23 16:01:44.923][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-23 16:01:44.924][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-23 16:01:44.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:44.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:44.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:44.928][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-23 16:01:44.948][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-23 16:01:44.949][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:44.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:44.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:44.952][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-23 16:01:44.953][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-23 16:01:44.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:44.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:44.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:44.957][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-23 16:01:44.958][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-23 16:01:44.959][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-23 16:01:44.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:44.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:44.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:44.963][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-23 16:01:44.964][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-23 16:01:44.965][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-23 16:01:44.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:44.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:44.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:44.969][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-23 16:01:44.970][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-23 16:01:44.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:44.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:44.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:44.982][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-23 16:01:44.983][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-23 16:01:44.984][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-23 16:01:44.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:44.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:44.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:44.987][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-23 16:01:44.988][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-23 16:01:44.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:44.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:44.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:44.991][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-23 16:01:44.992][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-23 16:01:44.993][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-23 16:01:44.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:44.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:44.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:44.996][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-23 16:01:44.997][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-23 16:01:44.998][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-23 16:01:44.999][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-23 16:01:45.000][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-23 16:01:45.001][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-23 16:01:45.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.004][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-23 16:01:45.005][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-23 16:01:45.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.009][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-23 16:01:45.009][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-23 16:01:45.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.013][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-23 16:01:45.014][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-23 16:01:45.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.017][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-23 16:01:45.018][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-23 16:01:45.019][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-23 16:01:45.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.022][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-23 16:01:45.023][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-23 16:01:45.027][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-23 16:01:45.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.031][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-23 16:01:45.032][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-23 16:01:45.033][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-23 16:01:45.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.039][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-23 16:01:45.069][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-23 16:01:45.083][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-23 16:01:45.084][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.085][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-23 16:01:45.086][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.087][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-23 16:01:45.088][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-23 16:01:45.089][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-23 16:01:45.090][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-23 16:01:45.091][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-23 16:01:45.092][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.093][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-23 16:01:45.094][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-23 16:01:45.094][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-23 16:01:45.095][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.096][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-23 16:01:45.096][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-23 16:01:45.096][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-23 16:01:45.096][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-23 16:01:45.096][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-23 16:01:45.097][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-23 16:01:45.098][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-23 16:01:45.099][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-23 16:01:45.100][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-23 16:01:45.101][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-23 16:01:45.102][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-23 16:01:45.102][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-23 16:01:45.103][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-23 16:01:45.104][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-23 16:01:45.105][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-23 16:01:45.106][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-23 16:01:45.107][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-23 16:01:45.108][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-23 16:01:45.110][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-23 16:01:45.111][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-23 16:01:45.111][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.112][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-23 16:01:45.113][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.114][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-23 16:01:45.115][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-23 16:01:45.116][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-23 16:01:45.117][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-23 16:01:45.118][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-23 16:01:45.119][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.120][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-23 16:01:45.121][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-23 16:01:45.122][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-23 16:01:45.123][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.123][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-23 16:01:45.123][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-23 16:01:45.123][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-23 16:01:45.123][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-23 16:01:45.123][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-23 16:01:45.124][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-23 16:01:45.125][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-23 16:01:45.126][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-23 16:01:45.127][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-23 16:01:45.128][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-23 16:01:45.129][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-23 16:01:45.130][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-23 16:01:45.131][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-23 16:01:45.131][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-23 16:01:45.132][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-23 16:01:45.133][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-23 16:01:45.134][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-23 16:01:45.135][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-23 16:01:45.137][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.138][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-23 16:01:45.139][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.140][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-23 16:01:45.140][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.141][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-23 16:01:45.142][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-23 16:01:45.143][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-23 16:01:45.144][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-23 16:01:45.145][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-23 16:01:45.146][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-23 16:01:45.147][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-23 16:01:45.148][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-23 16:01:45.149][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-23 16:01:45.150][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.151][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-23 16:01:45.152][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-23 16:01:45.153][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-23 16:01:45.153][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-23 16:01:45.154][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-23 16:01:45.155][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-23 16:01:45.156][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-23 16:01:45.157][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-23 16:01:45.158][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-23 16:01:45.159][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-23 16:01:45.159][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-23 16:01:45.160][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-23 16:01:45.161][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-23 16:01:45.162][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-23 16:01:45.164][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.165][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-23 16:01:45.166][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.167][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-23 16:01:45.168][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.169][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-23 16:01:45.170][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-23 16:01:45.170][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-23 16:01:45.171][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-23 16:01:45.172][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-23 16:01:45.173][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-23 16:01:45.174][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-23 16:01:45.175][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-23 16:01:45.176][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-23 16:01:45.177][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.182][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-23 16:01:45.183][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-23 16:01:45.184][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-23 16:01:45.185][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-23 16:01:45.186][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-23 16:01:45.186][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-23 16:01:45.187][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-23 16:01:45.188][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-23 16:01:45.189][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-23 16:01:45.190][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-23 16:01:45.191][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-23 16:01:45.192][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-23 16:01:45.192][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-23 16:01:45.196][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-23 16:01:45.197][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.264][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-23 16:01:45.269][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-23 16:01:45.270][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-23 16:01:45.271][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-23 16:01:45.273][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-23 16:01:45.274][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-23 16:01:45.275][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-23 16:01:45.276][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-23 16:01:45.278][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-23 16:01:45.279][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-23 16:01:45.280][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-23 16:01:45.282][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-23 16:01:45.283][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-23 16:01:45.284][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-23 16:01:45.285][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-23 16:01:45.287][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-23 16:01:45.288][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-23 16:01:45.289][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-23 16:01:45.291][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-23 16:01:45.292][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-23 16:01:45.293][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-23 16:01:45.294][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-23 16:01:45.296][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-23 16:01:45.297][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-23 16:01:45.298][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-23 16:01:45.300][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-23 16:01:45.301][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-23 16:01:45.302][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-23 16:01:45.304][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-23 16:01:45.305][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-23 16:01:45.306][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-23 16:01:45.307][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-23 16:01:45.309][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-23 16:01:45.310][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-23 16:01:45.311][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-23 16:01:45.313][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-23 16:01:45.314][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-23 16:01:45.315][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-23 16:01:45.316][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-23 16:01:45.318][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-23 16:01:45.319][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-23 16:01:45.320][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-23 16:01:45.322][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-23 16:01:45.323][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-23 16:01:45.324][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-23 16:01:45.326][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-23 16:01:45.327][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-23 16:01:45.328][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-23 16:01:45.330][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-23 16:01:45.331][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-23 16:01:45.332][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-23 16:01:45.333][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-23 16:01:45.335][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-23 16:01:45.336][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-23 16:01:45.337][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-23 16:01:45.339][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-23 16:01:45.340][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-23 16:01:45.341][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-23 16:01:45.342][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-23 16:01:45.344][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-23 16:01:45.345][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-23 16:01:45.346][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-23 16:01:45.348][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-23 16:01:45.349][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-23 16:01:45.350][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-23 16:01:45.351][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-23 16:01:45.353][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-23 16:01:45.354][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-23 16:01:45.355][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-23 16:01:45.357][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-23 16:01:45.358][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-23 16:01:45.359][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-23 16:01:45.361][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-23 16:01:45.362][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-23 16:01:45.363][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-23 16:01:45.364][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-23 16:01:45.366][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-23 16:01:45.367][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-23 16:01:45.368][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-23 16:01:45.370][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-23 16:01:45.371][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-23 16:01:45.372][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-23 16:01:45.374][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-23 16:01:45.383][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-23 16:01:45.385][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-08-23 16:01:45.388][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-23 16:01:45.389][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.390][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-23 16:01:45.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:45.489][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-23 16:01:45.498][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-23 16:01:45.499][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-23 16:01:45.500][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-23 16:01:45.501][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.502][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-23 16:01:45.509][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.511][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-23 16:01:45.512][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.513][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-23 16:01:45.514][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-23 16:01:45.515][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-23 16:01:45.516][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.517][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-23 16:01:45.519][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-23 16:01:45.520][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-23 16:01:45.520][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-23 16:01:45.520][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-23 16:01:45.520][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-23 16:01:45.520][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-23 16:01:45.520][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-23 16:01:45.520][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-23 16:01:45.520][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-23 16:01:45.520][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-23 16:01:45.520][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-23 16:01:45.520][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-23 16:01:45.521][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-23 16:01:45.522][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-23 16:01:45.522][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-23 16:01:45.522][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-23 16:01:45.523][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-23 16:01:45.524][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-23 16:01:45.525][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-23 16:01:45.526][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-23 16:01:45.527][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-23 16:01:45.528][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-23 16:01:45.529][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-23 16:01:45.530][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-23 16:01:45.530][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-23 16:01:45.531][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-23 16:01:45.532][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-23 16:01:45.533][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-23 16:01:45.534][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-23 16:01:45.534][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-23 16:01:45.541][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-23 16:01:45.543][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-23 16:01:45.545][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-23 16:01:45.546][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-23 16:01:45.548][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-23 16:01:45.550][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-23 16:01:45.578][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-23 16:01:45.596][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-23 16:01:45.605][biodb::testThat]
biodb.INFO [2025-08-23 16:01:45.606][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-08-23 16:01:45.607][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-23 16:01:45.608][biodb::testThat]
biodb.TRACE[2025-08-23 16:01:45.611][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-08-23 16:01:45.623][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:45.626][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:45.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:45.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:45.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:45.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:45.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:45.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:45.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:45.659][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.660][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.662][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.680][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:45.681][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:45.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.710][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:45.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:45.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.714][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:45.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:45.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.717][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:45.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:45.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.722][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:45.723][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:45.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.725][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:45.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.730][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:45.731][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:45.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.733][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:45.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:45.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.738][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:45.739][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:45.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.743][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:45.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:45.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.747][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:45.748][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:45.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.749][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.751][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:45.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:45.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.755][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:45.756][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:45.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:45.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:45.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.762][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:45.763][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:45.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:45.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:45.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.770][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:45.771][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:45.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.773][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.774][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:45.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:45.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.778][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:45.779][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:45.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.781][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:45.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:45.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:45.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:45.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:45.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:45.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:45.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:45.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:45.858][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-08-23 16:01:45.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:45.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:45.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:45.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:45.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:45.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:45.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:45.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:45.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:45.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:45.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:45.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:45.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.903][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-23 16:01:45.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-23 16:01:45.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.907][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-23 16:01:45.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-23 16:01:45.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.910][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-23 16:01:45.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-23 16:01:45.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.914][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-23 16:01:45.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-23 16:01:45.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:45.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:45.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:45.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:45.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:45.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:45.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:45.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:45.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.996][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:45.997][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:45.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:45.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:45.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:46.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:46.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:46.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:46.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:46.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:46.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.045][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:46.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:46.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:46.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:46.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:46.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:46.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:46.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:46.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:46.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:46.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.070][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:46.071][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:46.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.073][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.073][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:46.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:46.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.094][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.095][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.119][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.120][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:46.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:46.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.139][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:46.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:46.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:46.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:46.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.147][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:46.148][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:46.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.150][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:46.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:46.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.160][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.164][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.167][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.171][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.172][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.174][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.188][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.192][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.196][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.197][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.198][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.199][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:46.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:46.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:46.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:46.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:46.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:46.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.220][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:46.221][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:46.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.223][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.224][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:46.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:46.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.244][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.245][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:46.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:46.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:46.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:46.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:46.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.269][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:46.270][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:46.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.272][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:46.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:46.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.282][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.310][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.312][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.315][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:46.317][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:46.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.322][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:46.323][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:46.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.328][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:46.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:46.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.335][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.336][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.338][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.341][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.342][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.348][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.349][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.357][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.361][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.362][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.367][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:46.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:46.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.374][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:46.375][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:46.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.376][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.392][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-08-23 16:01:46.424][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:46.425][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:46.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:46.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:46.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:46.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:46.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:46.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:46.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:46.436][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.437][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.439][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.463][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:46.464][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:46.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.467][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:46.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:46.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.471][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:46.472][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:46.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:46.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:46.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.479][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:46.479][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:46.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.481][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:46.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:46.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.486][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.487][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.494][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.495][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.498][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.501][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:46.502][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.504][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.505][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:46.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.509][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.510][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.512][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.517][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:46.518][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:46.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:46.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:46.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.524][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:46.525][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.527][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.528][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.532][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:46.533][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:46.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:46.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:46.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:46.577][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-08-23 16:01:46.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:46.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:46.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:46.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:46.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.622][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-23 16:01:46.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-23 16:01:46.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.625][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-23 16:01:46.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-23 16:01:46.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.629][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-23 16:01:46.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-23 16:01:46.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.633][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-23 16:01:46.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-23 16:01:46.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.711][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.714][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:46.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:46.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:46.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:46.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:46.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:46.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:46.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:46.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:46.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.760][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:46.761][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:46.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.764][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:46.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:46.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:46.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:46.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.777][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:46.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:46.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:46.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:46.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.788][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:46.789][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:46.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:46.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:46.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.802][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:46.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.813][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:46.814][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.816][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:46.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.840][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:46.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.861][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.862][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.864][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:46.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.875][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:46.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:46.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.878][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:46.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:46.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.882][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:46.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:46.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.886][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:46.887][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:46.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.889][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:46.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:46.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.899][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.903][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.910][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.911][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.914][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:46.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.923][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.927][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.931][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.935][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.936][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.938][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:46.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:46.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:46.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:46.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:46.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:46.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:46.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.963][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:46.964][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:46.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.965][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:46.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.988][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:46.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:46.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:46.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.012][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.013][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.025][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.026][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.028][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.032][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:47.033][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:47.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.034][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.038][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:47.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:47.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.041][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.051][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.052][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.058][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.059][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.060][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.064][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.067][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.071][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.072][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.073][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.077][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.078][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.084][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:47.085][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:47.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.090][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:47.091][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:47.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.093][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.097][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-08-23 16:01:47.098][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:47.099][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:47.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:47.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:47.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:47.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:47.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:47.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:47.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:47.115][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.117][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.122][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:47.123][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:47.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.126][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:47.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:47.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.130][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:47.131][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:47.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.133][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:47.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:47.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.137][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.145][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.146][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.148][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.153][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.154][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.157][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.161][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:47.162][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.164][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:47.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.168][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.169][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.176][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:47.177][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:47.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.179][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.180][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:47.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:47.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.184][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:47.185][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.186][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.188][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:47.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.191][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:47.192][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:47.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.195][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:47.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:47.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:47.236][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-08-23 16:01:47.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.260][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-23 16:01:47.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-23 16:01:47.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.264][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-23 16:01:47.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-23 16:01:47.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.268][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-23 16:01:47.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-23 16:01:47.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.275][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-23 16:01:47.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-23 16:01:47.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.343][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.346][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:47.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:47.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:47.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:47.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:47.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:47.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.368][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:47.369][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:47.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:47.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:47.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.392][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.393][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.395][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.417][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.418][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.430][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.437][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.441][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.445][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.446][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.469][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.470][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.472][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.494][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.495][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.507][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:47.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:47.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.511][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:47.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:47.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.515][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:47.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:47.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.519][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:47.519][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:47.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.521][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.522][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:47.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:47.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.532][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.536][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.539][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.543][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.544][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.547][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:47.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:47.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:47.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:47.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:47.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:47.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.567][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:47.568][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:47.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.570][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:47.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:47.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.581][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:47.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:47.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:47.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:47.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.588][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:47.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:47.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.592][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:47.593][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:47.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:47.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:47.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.609][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.610][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.612][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.615][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:47.616][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:47.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.618][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.622][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:47.623][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:47.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.624][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.628][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.641][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.642][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.644][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.647][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.648][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.660][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.661][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.663][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.667][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:47.668][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:47.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.673][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:47.674][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:47.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.676][ef$get] fields variable is a list.
biodb.INFO [2025-08-23 16:01:47.682][biodb::testThat]
biodb.INFO [2025-08-23 16:01:47.683][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-08-23 16:01:47.684][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-23 16:01:47.685][biodb::testThat]
biodb.DEBUG[2025-08-23 16:01:47.686][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-08-23 16:01:47.689][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-08-23 16:01:47.692][cch$loadContents] Load 3 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:47.699][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml.
fscache.DEBUG[2025-08-23 16:01:47.703][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml.
fscache.DEBUG[2025-08-23 16:01:47.706][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml.
biodb.DEBUG[2025-08-23 16:01:47.707][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:47.708][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-08-23 16:01:47.709][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:47.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:47.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:47.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:47.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:47.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:47.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:47.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:47.721][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.724][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.729][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:47.730][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:47.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.733][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:47.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:47.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.736][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:47.737][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:47.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.739][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:47.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:47.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.744][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.745][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.747][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.754][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.759][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.760][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.762][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.763][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.767][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:47.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.774][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.775][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:47.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.778][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.781][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.786][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:47.787][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:47.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.789][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:47.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:47.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.794][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:47.795][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.797][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:47.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.801][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:47.802][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:47.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:47.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:47.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:47.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:47.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:47.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:47.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:47.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:47.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:47.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:47.845][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.846][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.848][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.853][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:47.854][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:47.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.855][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:47.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:47.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.860][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:47.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:47.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:47.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:47.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.868][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.871][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.876][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.877][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.878][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:47.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.883][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.884][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.887][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:47.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.891][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:47.892][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.893][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.894][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:47.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:47.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.898][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.899][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.901][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.906][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:47.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:47.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.908][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:47.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:47.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.913][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:47.914][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.917][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:47.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:47.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.921][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:47.922][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:47.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.925][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:47.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:47.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:47.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:47.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:47.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:47.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:47.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:47.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:47.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:47.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:47.970][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.971][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:47.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:47.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.977][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:47.978][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:47.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.981][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:47.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:47.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.985][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:47.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:47.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:47.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:47.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.993][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:47.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:47.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:47.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:47.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.000][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:48.001][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:48.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:48.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:48.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.008][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:48.009][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:48.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.012][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:48.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:48.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.015][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:48.016][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:48.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.019][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:48.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:48.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.023][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:48.024][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:48.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.026][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:48.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:48.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.031][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:48.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:48.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.033][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:48.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:48.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.038][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:48.039][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:48.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.041][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.042][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:48.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:48.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.046][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:48.047][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:48.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.049][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:48.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:48.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:48.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:48.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:48.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:48.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:48.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:48.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:48.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:48.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:48.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:48.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:48.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:48.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:48.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:48.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:48.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:48.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:48.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:48.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:48.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:48.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:48.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:48.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:48.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:48.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:48.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:48.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:48.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:48.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:48.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:48.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:48.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:48.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:48.116][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-08-23 16:01:48.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-23 16:01:48.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-23 16:01:48.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-23 16:01:48.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-23 16:01:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-23 16:01:48.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-23 16:01:48.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-23 16:01:48.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-23 16:01:48.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-23 16:01:48.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-23 16:01:48.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-23 16:01:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-23 16:01:48.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-23 16:01:48.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-23 16:01:48.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-23 16:01:48.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-23 16:01:48.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-23 16:01:48.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-23 16:01:48.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-23 16:01:48.163][biodb::testThat]
biodb.INFO [2025-08-23 16:01:48.164][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-08-23 16:01:48.165][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-23 16:01:48.166][biodb::testThat]
biodb.TRACE[2025-08-23 16:01:48.169][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:48.170][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:48.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.171][ef$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:48.173][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-08-23 16:01:48.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:48.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:48.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:48.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:48.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:48.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:48.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:48.208][function(conn, opt)] With value "squalene".
sched.DEBUG[2025-08-23 16:01:48.213][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-08-23 16:01:48.232][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:48.238][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-08-23 16:01:48.239][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-23 16:01:48.256][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:48.288][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:48.292][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-23 16:01:48.293][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:01:48.295][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-08-23 16:01:48.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:48.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:48.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.309][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:48.310][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:48.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.312][ef$get] fields variable is a list.
biodb.INFO [2025-08-23 16:01:48.315][biodb::testThat]
biodb.INFO [2025-08-23 16:01:48.316][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-08-23 16:01:48.317][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-23 16:01:48.318][biodb::testThat]
biodb.TRACE[2025-08-23 16:01:48.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:48.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:48.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:48.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:48.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:48.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:01:48.399][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:48.405][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:48.408][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-23 16:01:48.409][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-08-23 16:01:48.422][biodb::testThat]
biodb.INFO [2025-08-23 16:01:48.423][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-08-23 16:01:48.423][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-23 16:01:48.424][biodb::testThat]
biodb.TRACE[2025-08-23 16:01:48.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:48.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:48.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:48.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:48.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:48.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:48.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:48.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:48.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:48.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:48.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:48.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.454][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-23 16:01:48.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-23 16:01:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.458][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-23 16:01:48.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-23 16:01:48.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.462][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-23 16:01:48.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-23 16:01:48.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.466][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-23 16:01:48.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-23 16:01:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:48.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:48.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:48.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:48.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:48.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:48.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:48.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:48.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:48.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:48.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:48.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:48.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.500][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-23 16:01:48.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-23 16:01:48.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.503][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-23 16:01:48.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-23 16:01:48.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.507][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-23 16:01:48.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-23 16:01:48.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:48.511][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-23 16:01:48.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-23 16:01:48.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:48.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-23 16:01:48.519][biodb::testThat]
biodb.INFO [2025-08-23 16:01:48.520][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-08-23 16:01:48.521][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-23 16:01:48.522][biodb::testThat]
biodb.INFO [2025-08-23 16:01:48.529][biodb::testThat]
biodb.INFO [2025-08-23 16:01:48.530][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-08-23 16:01:48.531][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-23 16:01:48.532][biodb::testThat]
biodb.INFO [2025-08-23 16:01:48.538][biodb::testThat]
biodb.INFO [2025-08-23 16:01:48.539][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-08-23 16:01:48.540][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-23 16:01:48.540][biodb::testThat]
biodb.DEBUG[2025-08-23 16:01:48.544][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-08-23 16:01:49.904][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-08-23 16:01:51.486][biodb::testThat]
biodb.INFO [2025-08-23 16:01:51.493][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-08-23 16:01:51.494][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-23 16:01:51.495][biodb::testThat]
biodb.TRACE[2025-08-23 16:01:51.503][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:51.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:51.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.507][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:51.509][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:51.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.511][ef$get] fields variable is a list.
biodb.INFO [2025-08-23 16:01:51.513][biodb::testThat]
biodb.INFO [2025-08-23 16:01:51.514][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2025-08-23 16:01:51.515][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-23 16:01:51.516][biodb::testThat]
biodb.TRACE[2025-08-23 16:01:51.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:51.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:51.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:51.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:51.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:51.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:01:51.623][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:51.625][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:51.629][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-23 16:01:51.629][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-23 16:01:51.710][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:51.713][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:51.716][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-23 16:01:51.717][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-08-23 16:01:51.728][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:01:51.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:01:51.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:01:51.760][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:51.762][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:51.764][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-23 16:01:51.765][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:01:51.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:51.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:51.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:51.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:51.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:51.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:51.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:51.777][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-08-23 16:01:51.824][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:51.825][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:51.829][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml.
biodb.DEBUG[2025-08-23 16:01:51.830][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:51.831][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:51.832][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:51.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:51.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:51.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:51.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:51.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:51.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:51.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:51.844][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:51.845][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:51.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:51.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:51.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.852][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:51.853][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:51.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.855][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:51.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:51.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.860][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:51.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:51.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:51.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:51.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.867][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:51.868][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:51.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.870][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:51.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:51.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:51.876][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:51.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.878][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:51.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:51.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.883][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:51.884][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:51.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.885][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.887][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:51.888][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.889][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.890][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:51.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.894][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:51.895][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:51.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:51.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:51.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.902][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:51.903][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:51.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.906][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:51.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:51.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.910][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:51.911][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:51.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.912][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.913][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:51.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:51.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.917][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:51.918][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:51.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.920][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:51.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:51.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:51.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:51.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:51.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:51.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:51.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:51.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:51.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:51.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:51.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:51.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:51.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:51.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:51.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:51.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:51.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:51.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:51.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:51.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:51.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:51.966][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-08-23 16:01:51.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:51.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:51.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:51.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:01:51.987][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:51.989][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:51.991][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-23 16:01:51.992][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:01:52.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:52.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:52.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:52.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:52.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:52.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:52.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:52.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:52.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:52.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:52.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:52.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:52.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:52.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:52.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:52.046][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-08-23 16:01:52.047][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:52.049][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:52.052][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml.
biodb.DEBUG[2025-08-23 16:01:52.053][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:52.055][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:52.056][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:52.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:52.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:52.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:52.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:52.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:52.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:52.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:52.070][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.073][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.079][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:52.080][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:52.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.082][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.096][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:52.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:52.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.101][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:52.102][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:52.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.104][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:52.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:52.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.109][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:52.110][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:52.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:52.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:52.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.117][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.118][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.126][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.127][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.129][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.130][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:52.131][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.133][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.134][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:52.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.147][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:52.148][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:52.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:52.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:52.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.155][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:52.156][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:52.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.159][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:52.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:52.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.163][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:52.164][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:52.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:52.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:52.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:52.211][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-08-23 16:01:52.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:01:52.238][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:52.241][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:52.244][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-23 16:01:52.245][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:01:52.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:52.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:52.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:52.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:52.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:52.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:52.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:52.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:52.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:52.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:52.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:52.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:52.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:52.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:52.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:52.280][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-08-23 16:01:52.281][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:52.282][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:52.285][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml.
biodb.DEBUG[2025-08-23 16:01:52.286][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:52.287][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:52.288][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:52.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:52.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:52.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:52.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:52.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:52.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:52.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:52.300][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.302][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.307][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:52.308][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:52.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.311][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:52.312][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:52.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.314][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.315][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:52.316][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:52.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.323][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.324][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.327][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:52.328][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.331][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.332][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.334][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:52.335][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:52.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:52.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.342][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:52.343][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:52.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:52.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:52.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.350][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:52.351][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:52.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:52.391][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-08-23 16:01:52.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:52.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:52.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:52.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:52.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:52.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:52.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:52.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:52.423][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-08-23 16:01:52.424][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:52.425][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:52.429][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml.
biodb.DEBUG[2025-08-23 16:01:52.430][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:52.431][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:52.432][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:52.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:52.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:52.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:52.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:52.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:52.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:52.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:52.445][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.446][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.452][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:52.453][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:52.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.456][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:52.457][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:52.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.460][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:52.461][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:52.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.464][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.465][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.467][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.468][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.469][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.471][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.472][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:52.473][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.476][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.477][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.478][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.479][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:52.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:52.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.482][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:52.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:52.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.488][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:52.488][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:52.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.490][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.491][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:52.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:52.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.495][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:52.496][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:52.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.498][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:52.536][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-08-23 16:01:52.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:52.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:52.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:52.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:52.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:52.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:52.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:52.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:52.582][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-08-23 16:01:52.582][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:52.584][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:52.587][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml.
biodb.DEBUG[2025-08-23 16:01:52.588][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:52.590][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:52.591][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:52.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:52.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:52.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:52.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:52.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:52.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:52.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:52.602][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.603][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.610][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:52.611][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:52.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.613][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.614][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:52.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:52.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.617][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:52.619][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:52.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.626][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.627][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.628][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.630][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:52.631][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.633][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.634][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.637][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:52.638][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:52.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:52.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.645][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:52.646][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:52.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.648][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.649][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:52.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:52.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.653][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:52.654][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:52.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:52.694][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-08-23 16:01:52.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:52.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:52.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:52.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:52.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:52.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:52.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:52.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:52.727][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-08-23 16:01:52.728][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:52.729][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:52.734][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml.
biodb.DEBUG[2025-08-23 16:01:52.735][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:52.736][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:52.738][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:52.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:52.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:52.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:52.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:52.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:52.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:52.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:52.749][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.757][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:52.758][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:52.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.761][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:52.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:52.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.765][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:52.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:52.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.767][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:52.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:52.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.773][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:52.774][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:52.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:52.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:52.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.780][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.781][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.783][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.788][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.789][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.792][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.796][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:52.797][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.799][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:52.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.803][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.804][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.806][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.811][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:52.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:52.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.814][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:52.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.819][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:52.820][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:52.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.823][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:52.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:52.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.827][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:52.828][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:52.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.829][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:52.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:52.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:52.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:52.875][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-08-23 16:01:52.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:52.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:52.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:52.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:52.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:52.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:52.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:52.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:52.896][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-08-23 16:01:52.897][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:52.899][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:52.903][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml.
biodb.DEBUG[2025-08-23 16:01:52.904][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:52.905][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:52.906][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:52.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:52.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:52.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:52.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:52.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:52.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:52.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:52.918][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:52.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:52.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.926][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:52.927][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:52.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.929][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.930][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:52.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:52.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.934][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:52.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:52.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:52.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:52.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.942][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:52.943][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:52.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:52.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:52.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.950][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:52.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.957][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.958][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.960][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.961][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:52.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.965][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:52.966][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.969][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:52.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:52.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.973][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.974][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.975][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:52.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.980][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:52.981][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:52.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:52.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:52.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.988][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:52.989][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:52.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.991][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.992][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:52.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:52.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:52.996][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:52.997][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:52.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:52.999][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:53.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:53.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:53.045][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-08-23 16:01:53.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:53.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:53.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:53.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:53.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:53.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:53.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:53.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:53.066][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-08-23 16:01:53.067][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:53.069][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:53.072][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml.
biodb.DEBUG[2025-08-23 16:01:53.073][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:53.075][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:53.076][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:53.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:53.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:53.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:53.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:53.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:53.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:53.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:53.087][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.088][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.095][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:53.096][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:53.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.099][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:53.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:53.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.103][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:53.104][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:53.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:53.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:53.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.110][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:53.111][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:53.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:53.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:53.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.118][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.119][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.126][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:53.127][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:53.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.130][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:53.131][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.133][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:53.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.137][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.138][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.145][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:53.146][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:53.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.148][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:53.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:53.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.153][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:53.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:53.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.155][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:53.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:53.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.164][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:53.165][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:53.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.167][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:53.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:53.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:53.209][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-08-23 16:01:53.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:53.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:53.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:53.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:53.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:53.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:53.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:53.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:53.230][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-08-23 16:01:53.231][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:53.233][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:53.237][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml.
biodb.DEBUG[2025-08-23 16:01:53.238][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:53.239][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:53.240][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:53.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:53.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:53.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:53.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:53.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:53.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:53.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:53.252][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.253][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.255][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.260][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:53.261][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:53.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.263][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.264][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:53.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:53.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.267][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:53.268][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:53.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.271][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:53.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:53.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.275][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:53.276][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:53.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:53.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:53.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.283][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.284][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.291][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:53.292][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:53.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.294][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:53.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.298][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:53.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.302][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.303][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.310][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:53.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:53.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.317][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.318][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:53.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:53.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.322][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:53.322][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:53.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.324][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.325][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:53.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:53.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.329][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:53.330][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:53.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.332][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:53.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:53.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:53.374][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-08-23 16:01:53.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:53.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:53.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:53.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:53.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:53.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:53.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:53.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:53.395][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-08-23 16:01:53.396][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:53.397][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:53.401][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml.
biodb.DEBUG[2025-08-23 16:01:53.402][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:53.403][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:53.404][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:53.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:53.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:53.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:53.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:53.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:53.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:53.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:53.416][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.417][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.424][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:53.425][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:53.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.426][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.428][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:53.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:53.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.431][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:53.432][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:53.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:53.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:53.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.439][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:53.440][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:53.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.442][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:53.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:53.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.447][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.448][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.454][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:53.455][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:53.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.458][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:53.459][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.466][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:53.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.470][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.471][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.478][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:53.479][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:53.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:53.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:53.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.485][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:53.486][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:53.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.488][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.489][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:53.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:53.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.493][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:53.494][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:53.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.496][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:53.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:53.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:53.538][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-08-23 16:01:53.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:53.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:53.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:53.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:53.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:53.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:53.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:53.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:53.559][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-08-23 16:01:53.560][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:53.562][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:53.565][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml.
biodb.DEBUG[2025-08-23 16:01:53.566][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:53.568][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:53.569][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:53.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:53.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:53.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:53.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:53.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:53.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:53.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:53.581][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.582][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.588][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:53.589][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:53.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.591][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.592][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:53.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:53.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.596][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:53.597][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:53.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:53.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:53.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:53.605][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:53.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.607][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:53.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:53.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.616][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.618][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.623][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:53.624][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:53.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.626][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.627][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:53.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.631][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:53.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.635][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.636][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.642][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:53.643][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:53.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:53.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:53.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.650][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:53.651][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:53.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:53.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:53.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.658][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:53.659][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:53.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.660][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:53.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:53.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:53.703][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-08-23 16:01:53.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:53.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:53.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:53.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:53.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:53.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:53.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:53.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:53.724][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-08-23 16:01:53.725][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:53.727][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:53.731][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml.
biodb.DEBUG[2025-08-23 16:01:53.732][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:53.733][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:53.734][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:53.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:53.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:53.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:53.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:53.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:53.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:53.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:53.746][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.747][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.749][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.754][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:53.755][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:53.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.758][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:53.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:53.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.765][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:53.767][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:53.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:53.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:53.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.773][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:53.774][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:53.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.776][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:53.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:53.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.783][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.788][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:53.789][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:53.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.792][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:53.793][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.796][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:53.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.800][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.801][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.807][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:53.808][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:53.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:53.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:53.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.815][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:53.816][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:53.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.818][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.819][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:53.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:53.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.823][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:53.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:53.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:53.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:53.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:53.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:53.877][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-08-23 16:01:53.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:53.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:53.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:53.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:53.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:53.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:53.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:53.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:53.904][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-08-23 16:01:53.905][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:53.907][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:53.910][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml.
biodb.DEBUG[2025-08-23 16:01:53.911][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:53.912][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:53.914][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:53.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:53.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:53.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:53.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:53.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:53.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:53.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:53.941][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.942][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:53.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:53.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.949][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:53.950][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:53.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:53.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.958][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:53.959][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:53.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.961][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.962][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:53.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:53.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:53.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:53.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:53.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.975][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:53.976][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:53.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.979][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:53.980][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.983][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:53.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:53.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.987][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.988][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:53.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:53.996][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:53.997][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:53.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:53.999][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:54.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:54.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.004][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:54.005][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:54.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.007][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.008][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:54.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:54.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.013][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:54.014][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:54.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.016][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:54.055][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-08-23 16:01:54.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:54.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:54.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:54.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:54.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:54.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:54.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:54.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:54.077][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-08-23 16:01:54.078][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:54.080][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:54.082][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml.
biodb.DEBUG[2025-08-23 16:01:54.083][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:54.084][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:54.086][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:54.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:54.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:54.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:54.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:54.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:54.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:54.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:54.102][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.103][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.110][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:54.111][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:54.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.114][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:54.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:54.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.118][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:54.119][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:54.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:54.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:54.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.125][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:54.126][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:54.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.129][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.133][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:54.134][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:54.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.136][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.137][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:54.138][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.141][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:54.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.152][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:54.153][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:54.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.155][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:54.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:54.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.160][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:54.161][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:54.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.164][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:54.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:54.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:54.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:54.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.170][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:54.209][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-08-23 16:01:54.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:54.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:54.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:54.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:54.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:54.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:54.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:54.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:54.230][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-08-23 16:01:54.231][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:54.233][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:54.236][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml.
biodb.DEBUG[2025-08-23 16:01:54.237][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:54.238][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:54.239][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:54.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:54.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:54.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:54.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:54.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:54.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:54.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:54.255][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.256][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.263][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:54.264][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:54.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.266][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.267][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:54.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:54.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.270][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:54.271][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:54.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.273][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:54.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:54.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.278][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:54.279][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:54.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:54.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:54.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.286][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.287][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.288][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.293][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:54.294][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:54.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.297][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:54.298][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.300][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.301][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:54.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.313][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:54.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:54.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:54.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:54.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.320][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:54.321][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:54.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.324][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:54.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:54.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.328][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:54.329][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:54.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:54.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:54.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:54.373][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-08-23 16:01:54.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:54.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:54.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:54.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:54.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:54.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:54.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:54.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:54.399][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-08-23 16:01:54.400][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:54.402][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:54.406][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml.
biodb.DEBUG[2025-08-23 16:01:54.407][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:54.408][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:54.409][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:54.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:54.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:54.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:54.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:54.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:54.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:54.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:54.421][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.422][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.424][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.429][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:54.430][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:54.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.433][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:54.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:54.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.436][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:54.437][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:54.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.439][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:54.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.444][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:54.445][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:54.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:54.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:54.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.452][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.453][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.454][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.459][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:54.460][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:54.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.462][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.463][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:54.464][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.467][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:54.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.471][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.472][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.474][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.479][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:54.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:54.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.481][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:54.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:54.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.486][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:54.487][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:54.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.490][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:54.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:54.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.494][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:54.495][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:54.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:54.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:54.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:54.543][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-08-23 16:01:54.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:54.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:54.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:54.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:54.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:54.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:54.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:54.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:54.564][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-08-23 16:01:54.565][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:54.567][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:54.571][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml.
biodb.DEBUG[2025-08-23 16:01:54.572][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:54.573][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:54.574][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:54.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:54.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:54.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:54.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:54.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:54.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:54.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:54.586][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.587][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.593][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:54.594][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:54.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.596][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.597][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:54.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:54.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.601][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:54.602][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:54.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.604][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:54.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:54.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.609][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:54.610][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:54.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.611][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:54.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:54.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.616][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.619][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.624][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:54.625][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:54.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.627][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.628][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:54.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.632][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:54.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.636][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.636][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.638][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.643][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:54.644][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:54.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.646][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:54.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:54.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.651][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:54.652][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:54.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.655][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:54.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:54.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.659][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:54.660][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:54.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.663][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:54.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:54.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:54.708][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-08-23 16:01:54.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:54.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:54.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:54.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:54.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:54.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:54.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:54.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:54.729][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-08-23 16:01:54.730][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:54.731][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:54.735][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml.
biodb.DEBUG[2025-08-23 16:01:54.736][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:54.738][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:54.739][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:54.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:54.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:54.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:54.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:54.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:54.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:54.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:54.751][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.752][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.758][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:54.759][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:54.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.762][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:54.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:54.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.766][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:54.767][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:54.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.769][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:54.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:54.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:54.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:54.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:54.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:54.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.790][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:54.791][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:54.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.794][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:54.795][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.798][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:54.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.802][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.803][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.809][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:54.810][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:54.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.812][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:54.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:54.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.817][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:54.818][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:54.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.820][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.821][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:54.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:54.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.825][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:54.826][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:54.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:54.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:54.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:54.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:54.873][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-08-23 16:01:54.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:54.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:54.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:54.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:54.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:54.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:54.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:54.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:54.895][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-08-23 16:01:54.896][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:54.897][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:54.901][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml.
biodb.DEBUG[2025-08-23 16:01:54.902][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:54.903][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:54.904][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:54.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:54.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:54.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:54.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:54.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:54.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:54.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:54.916][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:54.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:54.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.924][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:54.925][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:54.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.928][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:54.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:54.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.932][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:54.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:54.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:54.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:54.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.939][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:54.940][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:54.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:54.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:54.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.950][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:54.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.955][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:54.956][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:54.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.957][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.959][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:54.960][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.961][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.962][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:54.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:54.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.966][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:54.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.974][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:54.975][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:54.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.977][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:54.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.982][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:54.983][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:54.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.989][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:54.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:54.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.993][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:54.994][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:54.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:54.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:54.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:54.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:54.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.038][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-08-23 16:01:55.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:55.059][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-08-23 16:01:55.060][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:55.062][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:55.065][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml.
biodb.DEBUG[2025-08-23 16:01:55.066][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:55.067][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:55.068][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:55.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.080][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.088][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:55.088][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:55.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.091][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:55.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:55.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.095][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:55.096][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:55.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:55.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:55.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.103][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:55.104][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:55.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:55.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.111][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:55.112][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:55.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.114][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:55.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:55.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.119][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:55.120][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:55.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.122][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:55.123][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.126][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:55.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.130][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.131][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.137][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.143][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:55.144][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:55.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.145][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:55.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:55.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.151][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:55.152][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:55.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.153][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.155][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:55.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:55.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:55.160][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:55.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:55.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:55.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.204][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-08-23 16:01:55.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:55.226][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-08-23 16:01:55.227][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:55.228][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:55.231][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml.
biodb.DEBUG[2025-08-23 16:01:55.232][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:55.233][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:55.235][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:55.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.247][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.255][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:55.256][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:55.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.259][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:55.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:55.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.263][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:55.264][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:55.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.265][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.267][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:55.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:55.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.270][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:55.271][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:55.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.273][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:55.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.278][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:55.279][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:55.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:55.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:55.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.290][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:55.291][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:55.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.294][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:55.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.297][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:55.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.301][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.304][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.309][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:55.310][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:55.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:55.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:55.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.316][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:55.317][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:55.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.319][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.320][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:55.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:55.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.324][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:55.325][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:55.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.327][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.328][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:55.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:55.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:55.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.369][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-08-23 16:01:55.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:01:55.396][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:55.398][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:55.402][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-23 16:01:55.403][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:01:55.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:55.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:55.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:01:55.902][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:55.904][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:55.906][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/63dc67d905e130c19900bd338bad7ba9.content.
sched.DEBUG[2025-08-23 16:01:55.907][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-23 16:01:55.909][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:55.912][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:55.914][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/287cac4c6e727656d926f26e3952924c.content.
sched.DEBUG[2025-08-23 16:01:55.915][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:01:55.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:55.927][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-08-23 16:01:55.928][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:55.929][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:55.933][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml.
biodb.DEBUG[2025-08-23 16:01:55.934][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:55.935][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:55.936][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:55.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:55.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:55.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:55.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:55.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:55.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:55.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:55.948][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.951][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:55.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:55.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.955][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:55.956][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:55.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.958][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.959][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:55.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:55.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.963][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:55.964][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:55.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.966][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:55.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:55.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.971][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:55.972][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:55.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:55.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:55.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.979][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:55.980][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:55.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:55.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:55.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.986][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:55.987][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:55.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.989][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.990][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:55.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:55.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.994][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:55.995][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:55.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:55.997][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:55.998][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:55.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:56.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.002][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.003][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.014][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:56.015][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:56.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:56.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:56.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.022][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:56.023][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:56.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.025][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:56.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.029][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:56.030][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:56.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:56.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:56.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:56.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:56.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:56.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:56.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:56.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:56.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.074][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-08-23 16:01:56.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:56.116][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-08-23 16:01:56.117][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:56.118][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:56.122][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml.
biodb.DEBUG[2025-08-23 16:01:56.123][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:56.124][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:56.125][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:56.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.137][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.144][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:56.145][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:56.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.148][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:56.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:56.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.156][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:56.157][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:56.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.159][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:56.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:56.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.164][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:56.165][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:56.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.167][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:56.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:56.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.172][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:56.173][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:56.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.174][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:56.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:56.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.179][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:56.180][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:56.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.183][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:56.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:56.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.186][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.187][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:56.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:56.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.191][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.192][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.193][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.198][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:56.199][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:56.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.201][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:56.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:56.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.206][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:56.207][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:56.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.210][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:56.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:56.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.214][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:56.215][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:56.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.216][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:56.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:56.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:56.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:56.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:56.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:56.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:56.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:56.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:56.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:56.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.259][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-08-23 16:01:56.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:01:56.286][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:56.288][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:56.291][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-23 16:01:56.292][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:01:56.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:01:56.754][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:56.757][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:56.760][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-23 16:01:56.761][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:01:56.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:56.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:56.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:56.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:56.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:56.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:56.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:56.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:56.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:56.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:56.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:56.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:57.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:57.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:57.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:57.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:57.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:57.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:57.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:57.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:57.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:01:57.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:01:57.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-23 16:01:57.222][biodb::testThat]
biodb.INFO [2025-08-23 16:01:57.223][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-08-23 16:01:57.224][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-23 16:01:57.225][biodb::testThat]
biodb.TRACE[2025-08-23 16:01:57.228][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:01:57.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:01:57.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.231][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:01:57.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:01:57.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.235][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:01:57.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:01:57.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:57.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:01:57.297][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:57.299][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:57.301][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-23 16:01:57.302][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:01:57.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:01:57.329][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:57.332][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:57.334][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-23 16:01:57.335][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:01:57.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:57.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:57.378][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:01:57.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:57.396][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:01:57.397][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:01:57.398][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:01:57.399][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:57.400][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.401][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.403][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.407][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:57.408][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:57.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.413][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:01:57.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.434][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-23 16:01:57.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:57.456][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:01:57.457][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:01:57.458][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:01:57.459][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:57.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.467][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.468][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:57.468][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:57.469][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.472][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.473][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:01:57.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.485][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-23 16:01:57.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.503][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:57.504][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:01:57.504][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:01:57.505][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:01:57.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:57.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.515][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:57.515][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:57.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.520][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:01:57.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.532][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-23 16:01:57.533][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:01:57.534][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:01:57.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:01:57.548][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:57.550][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:57.552][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-23 16:01:57.553][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:01:57.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:57.564][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2025-08-23 16:01:57.565][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:57.567][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:57.570][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml.
biodb.DEBUG[2025-08-23 16:01:57.571][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:57.572][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:57.573][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:57.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.585][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.586][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.587][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.592][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:57.593][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:57.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.595][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.596][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:57.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:57.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.604][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:57.605][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:57.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.607][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:57.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:57.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.612][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:57.613][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:57.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.615][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:57.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:57.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:57.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:57.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:57.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:57.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.627][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:57.628][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:57.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.631][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:57.632][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.634][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.635][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:57.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.639][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.640][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.642][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.647][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:57.648][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:57.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.649][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.651][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:57.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:57.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.654][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:57.655][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:57.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.658][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:57.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:57.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.662][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:57.663][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:57.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:57.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:57.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:57.707][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2025-08-23 16:01:57.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:57.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:57.729][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2025-08-23 16:01:57.730][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:57.731][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:57.734][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml.
biodb.DEBUG[2025-08-23 16:01:57.735][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:57.737][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:57.738][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:57.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.754][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.755][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.761][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:57.762][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:57.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.765][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:57.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:57.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.769][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:57.770][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:57.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.772][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.773][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:57.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:57.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:57.777][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:57.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:57.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:57.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.784][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:57.785][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:57.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.787][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:57.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:57.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.792][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:57.793][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:57.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.796][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:57.797][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.799][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:57.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.803][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.804][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.806][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.811][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:57.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:57.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.814][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:57.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:57.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.819][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:57.820][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:57.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.822][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:57.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:57.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.826][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:57.827][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:57.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.829][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:57.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:57.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:57.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:57.871][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2025-08-23 16:01:57.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:01:57.884][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:57.886][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:57.890][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-23 16:01:57.894][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:01:57.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:57.907][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2025-08-23 16:01:57.908][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:57.909][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:57.914][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml.
biodb.DEBUG[2025-08-23 16:01:57.915][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:57.916][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:57.917][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:57.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:57.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:57.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:57.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:57.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:57.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:57.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:57.929][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.931][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:57.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:57.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.936][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:57.937][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:57.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.940][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:57.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:57.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.944][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:57.945][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:57.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:57.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:57.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.952][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:57.953][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:57.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.955][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:57.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:57.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.960][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:57.961][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:57.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:57.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:57.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.967][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:57.968][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:57.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.970][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:57.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:57.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.975][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:57.976][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.979][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:57.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:57.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.983][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.984][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:57.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.990][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:57.991][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:57.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:57.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:57.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:57.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:57.998][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:57.999][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:58.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.002][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:58.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:58.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.006][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:58.007][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:58.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:58.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:58.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:58.056][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2025-08-23 16:01:58.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:58.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:58.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:58.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:58.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:58.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:58.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:58.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:58.078][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2025-08-23 16:01:58.078][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:58.080][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:58.085][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml.
biodb.DEBUG[2025-08-23 16:01:58.086][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:58.087][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:58.088][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:58.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:58.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:58.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:58.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:58.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:58.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:58.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:58.100][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.101][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.103][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.107][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:58.108][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:58.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.111][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:58.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:58.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.115][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:58.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:58.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.118][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:58.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:58.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.123][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:58.124][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:58.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.126][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:58.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:58.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.131][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.132][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.133][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.138][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:58.139][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:58.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.142][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:58.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:58.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.146][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:58.147][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.150][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:58.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:58.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:58.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:58.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:58.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.161][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:58.162][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:58.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:58.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:58.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.169][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:58.170][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:58.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.173][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:58.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:58.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.177][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:58.178][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:58.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:58.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:58.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:58.227][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2025-08-23 16:01:58.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:58.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:58.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:58.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:58.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:58.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:58.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:58.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:58.249][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2025-08-23 16:01:58.250][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:58.251][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:58.254][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml.
biodb.DEBUG[2025-08-23 16:01:58.255][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:58.257][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:58.258][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:58.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:58.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:58.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:58.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:58.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:58.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:58.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:58.269][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.271][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.272][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.277][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:58.278][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:58.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:58.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:58.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.285][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:58.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:58.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.288][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:58.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:58.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.293][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:58.294][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:58.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:58.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:58.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.301][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.308][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:58.309][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:58.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.312][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:58.313][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.316][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:58.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.320][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:58.321][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:58.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:58.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:58.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.328][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:58.329][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:58.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:58.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:58.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.340][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:58.342][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:58.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.345][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:58.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:58.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.348][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:58.349][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:58.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:58.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:58.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:58.393][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2025-08-23 16:01:58.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:58.428][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:01:58.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:58.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:58.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:58.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:58.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:58.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:58.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:58.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.472][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:58.473][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:01:58.474][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:01:58.475][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:01:58.476][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:58.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:58.485][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:58.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.490][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:01:58.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-23 16:01:58.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:58.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:58.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:58.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:58.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:58.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:58.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:58.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:58.521][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:01:58.521][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:01:58.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:01:58.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:58.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.527][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.531][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:58.532][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:58.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.536][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.537][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:01:58.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.549][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-23 16:01:58.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:58.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:58.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:58.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:58.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:58.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:58.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:58.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:58.568][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:01:58.569][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:01:58.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:01:58.571][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:58.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.574][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:58.580][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:01:58.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.584][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:01:58.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.597][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-23 16:01:58.598][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:01:58.599][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:01:58.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:58.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:58.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:58.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:58.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:58.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:58.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:01:58.616][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:01:58.618][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:01:58.620][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-23 16:01:58.621][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:01:58.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:58.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:58.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:58.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:58.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:58.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:58.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:58.633][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2025-08-23 16:01:58.633][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:58.635][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:58.638][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml.
biodb.DEBUG[2025-08-23 16:01:58.639][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:58.640][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:58.641][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:58.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:58.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:58.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:58.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:58.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:58.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:58.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:58.653][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.654][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.660][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:58.661][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:58.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.663][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.664][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:58.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:58.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.668][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:58.669][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:58.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.671][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:58.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:58.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.676][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:58.677][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:58.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:58.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:58.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.684][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.685][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.691][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:58.692][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:58.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.695][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:58.696][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.698][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.699][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:58.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.703][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:58.704][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:58.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.706][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:58.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:58.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.710][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:58.711][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:58.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:58.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:58.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.718][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:58.719][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:58.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.721][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.722][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:58.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:58.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.726][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:58.727][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:58.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.729][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:58.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:58.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:58.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:58.909][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2025-08-23 16:01:58.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:58.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:58.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:58.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:58.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:58.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:58.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:58.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:58.930][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2025-08-23 16:01:58.931][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:58.932][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:58.935][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml.
biodb.DEBUG[2025-08-23 16:01:58.936][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:58.937][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:58.939][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:58.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:58.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:58.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:58.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:58.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:58.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:58.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:58.950][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:58.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:58.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.957][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:58.958][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:58.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.960][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.961][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:58.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:58.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.965][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:58.966][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:58.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:58.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:58.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.972][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:58.973][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:58.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.975][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:58.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:58.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.980][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.981][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:58.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.987][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:58.988][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:58.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.991][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:58.992][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.995][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:58.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:58.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:58.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:58.999][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.000][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.006][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:59.007][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:59.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:59.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:59.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.014][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:59.015][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:59.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.018][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:59.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:59.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.022][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:59.023][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:59.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:59.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:59.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:59.070][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2025-08-23 16:01:59.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:59.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:59.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:59.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:59.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:59.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:59.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:59.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:59.095][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2025-08-23 16:01:59.096][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:59.098][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:59.101][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml.
biodb.DEBUG[2025-08-23 16:01:59.102][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:59.104][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:59.105][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:59.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:59.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:59.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:59.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:59.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:59.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:59.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:59.118][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.122][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.127][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:59.128][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:59.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.130][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.132][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:59.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:59.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.136][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:59.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:59.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:59.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:59.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.145][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:59.146][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:59.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.148][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:59.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:59.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.155][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.157][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.163][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:59.164][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:59.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.167][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:59.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.174][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.175][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:59.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.186][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:59.187][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:59.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.189][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:59.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:59.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.193][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:59.194][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:59.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.196][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.197][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:59.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:59.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.201][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:59.202][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:59.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:59.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:59.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:59.244][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2025-08-23 16:01:59.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:59.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:59.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:59.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:59.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:59.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:59.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:59.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:59.265][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2025-08-23 16:01:59.266][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:59.268][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:59.271][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml.
biodb.DEBUG[2025-08-23 16:01:59.272][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:59.273][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:59.274][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:59.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:59.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:59.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:59.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:59.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:59.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:59.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:59.285][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.286][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.288][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.293][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:59.294][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:59.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.295][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.297][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:59.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:59.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.300][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:59.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:59.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:59.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:59.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:59.309][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:59.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:59.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:59.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.316][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.317][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.323][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:59.324][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:59.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.327][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:59.328][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.331][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:59.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.335][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.336][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.342][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:59.343][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:59.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:59.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:59.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.350][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:59.351][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:59.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.354][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:59.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:59.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.357][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:59.358][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:59.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.361][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:59.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:59.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:59.402][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2025-08-23 16:01:59.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:59.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:59.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:59.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:59.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:59.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:59.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:59.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:59.423][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2025-08-23 16:01:59.424][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:59.425][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:59.429][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml.
biodb.DEBUG[2025-08-23 16:01:59.433][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:59.434][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:59.435][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:59.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:59.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:59.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:59.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:59.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:59.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:59.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:59.447][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.448][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.455][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:59.456][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:59.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:59.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:59.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.462][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:59.463][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:59.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.466][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:59.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:59.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.470][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:59.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:59.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.472][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:59.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:59.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.477][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.485][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:59.486][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:59.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.488][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:59.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.492][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:59.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.499][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.503][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:59.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:59.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:59.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:59.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.511][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:59.512][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:59.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.515][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:59.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:59.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.519][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:59.520][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:59.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.521][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:59.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:59.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:59.576][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2025-08-23 16:01:59.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:59.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:59.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:59.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:59.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:59.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:59.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:59.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:59.602][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2025-08-23 16:01:59.603][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:59.605][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:59.609][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml.
biodb.DEBUG[2025-08-23 16:01:59.610][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:59.611][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:59.612][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:59.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:59.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:59.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:59.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:59.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:59.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:59.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:59.627][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.636][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:59.637][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:59.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.639][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.640][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:59.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:59.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.645][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:59.646][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:59.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.648][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.649][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:59.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:59.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.653][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:59.654][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:59.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:59.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:59.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.662][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.663][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.670][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:59.671][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:59.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.674][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:59.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.677][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.679][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:59.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.683][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.684][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.691][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:59.692][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:59.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:59.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:59.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.700][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:59.701][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:59.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.703][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:59.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:59.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.708][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:59.709][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:59.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:59.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:59.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:59.767][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2025-08-23 16:01:59.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:59.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:59.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:59.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:59.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:59.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:59.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:59.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:59.790][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2025-08-23 16:01:59.791][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:59.792][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:59.795][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml.
biodb.DEBUG[2025-08-23 16:01:59.796][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:59.798][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:59.799][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:59.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:59.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:59.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:59.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:59.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:59.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:59.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:59.811][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.812][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.814][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.819][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:59.820][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:59.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.823][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:59.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:59.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.827][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:59.828][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:59.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:59.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:59.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.836][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:59.837][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:59.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.839][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:59.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:59.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.844][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.845][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.846][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:01:59.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.851][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:59.852][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:01:59.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.854][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.855][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:59.856][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.858][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.859][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:01:59.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.862][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.863][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:01:59.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.870][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:59.871][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:59.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:01:59.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:01:59.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.878][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:59.879][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:59.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.881][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:01:59.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:01:59.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:59.886][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:59.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:01:59.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:01:59.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:01:59.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:59.929][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2025-08-23 16:01:59.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:01:59.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:01:59.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:59.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:59.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:59.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:59.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:59.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:59.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:01:59.951][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2025-08-23 16:01:59.952][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:01:59.953][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:01:59.956][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml.
biodb.DEBUG[2025-08-23 16:01:59.957][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:01:59.958][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:01:59.959][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:01:59.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:01:59.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:01:59.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:01:59.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:01:59.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:01:59.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:01:59.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:01:59.971][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:01:59.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:01:59.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.979][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:59.980][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:59.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.983][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:01:59.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:01:59.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.987][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:59.988][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:59.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.989][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:01:59.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:01:59.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.994][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:59.995][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:01:59.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:01:59.997][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:01:59.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:01:59.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:00.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.005][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:00.006][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:00.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:00.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:00.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.013][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:00.014][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:00.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.016][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.017][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:00.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.020][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:00.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.024][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.025][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.032][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:00.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:00.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.034][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:00.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:00.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.039][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:00.040][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:00.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.043][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:00.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:00.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.046][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:00.047][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:00.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.049][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:00.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:00.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:00.090][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2025-08-23 16:02:00.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:00.102][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:00.105][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:00.107][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-23 16:02:00.108][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:00.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:00.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:00.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:00.140][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2025-08-23 16:02:00.141][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:00.142][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:00.147][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml.
biodb.DEBUG[2025-08-23 16:02:00.148][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:00.149][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:00.150][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:00.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:00.162][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.163][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.169][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:00.170][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:00.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.173][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:00.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:00.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.177][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:00.178][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:00.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.179][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.181][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:00.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:00.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.184][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:00.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:00.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.187][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:00.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:00.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.192][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:00.193][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:00.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:00.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:00.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.199][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:00.200][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:00.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.202][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.203][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:00.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.206][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.207][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:00.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.211][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.212][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.213][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.218][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:00.219][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:00.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:00.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:00.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.226][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:00.227][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:00.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.230][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:00.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:00.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.233][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:00.234][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:00.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:00.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:00.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:00.281][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2025-08-23 16:02:00.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:00.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:00.302][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2025-08-23 16:02:00.303][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:00.304][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:00.308][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml.
biodb.DEBUG[2025-08-23 16:02:00.309][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:00.310][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:00.311][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:00.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:00.322][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.330][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:00.331][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:00.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:00.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:00.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.337][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:00.338][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:00.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:00.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:00.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.345][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:00.346][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:00.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:00.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:00.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.352][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:00.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:00.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:00.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:00.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.360][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:00.361][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:00.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.363][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:00.364][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.366][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.367][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:00.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.378][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:00.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:00.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.381][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:00.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:00.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.386][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:00.387][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:00.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:00.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:00.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.393][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:00.394][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:00.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.396][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:00.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:00.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:00.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:00.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:00.437][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2025-08-23 16:02:00.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:00.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:00.449][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:00.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:00.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.467][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.468][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:00.469][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:00.470][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:00.471][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.472][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.473][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.474][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.478][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.479][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.480][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.484][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:00.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.497][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-23 16:02:00.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:00.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.515][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:00.516][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:00.517][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:00.521][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.526][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.527][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.530][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.534][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.535][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:00.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.547][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-23 16:02:00.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:00.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.564][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.565][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:00.566][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:00.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:00.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.568][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.571][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.574][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.576][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.580][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.581][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:00.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.593][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-23 16:02:00.593][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:00.594][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-23 16:02:00.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:00.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:00.707][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:00.709][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:00.711][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-23 16:02:00.712][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-23 16:02:00.714][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:00.717][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:00.719][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-23 16:02:00.720][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:00.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:00.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:00.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:00.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:00.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:00.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:00.787][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:00.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:00.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.805][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:00.806][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:00.807][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:00.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.812][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.816][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.817][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.820][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.821][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:00.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.833][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-23 16:02:00.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:00.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.882][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:00.883][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:00.884][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:00.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.893][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.902][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.906][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:00.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.919][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-23 16:02:00.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:00.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.937][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:00.938][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:00.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:00.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.943][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.948][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.949][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:00.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.953][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:00.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:00.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:00.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:00.965][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-23 16:02:00.966][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:00.967][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:00.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:00.980][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:00.982][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:00.985][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-23 16:02:00.986][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:00.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:00.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:00.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:00.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:00.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:00.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:00.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:00.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:00.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:01.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:01.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:01.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:01.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:01.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:01.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:01.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:01.020][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2025-08-23 16:02:01.021][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:01.023][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:01.026][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml.
biodb.DEBUG[2025-08-23 16:02:01.027][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:01.028][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:01.029][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:01.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:01.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:01.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:01.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:01.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:01.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:01.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:01.040][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.041][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.043][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.047][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:01.048][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:01.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.050][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.051][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:01.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:01.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.055][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:01.056][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:01.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.057][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:01.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:01.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.062][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:01.063][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:01.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.065][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:01.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:01.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.070][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.071][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.077][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:01.078][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:01.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.081][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:01.082][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:01.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.084][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:01.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:01.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.091][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.095][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:01.096][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:01.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:01.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:01.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.103][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:01.104][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:01.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.107][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:01.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:01.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.110][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:01.111][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:01.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:01.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:01.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:01.154][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2025-08-23 16:02:01.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:01.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:01.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:01.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:01.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:01.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:01.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:01.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:01.175][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2025-08-23 16:02:01.176][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:01.178][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:01.181][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml.
biodb.DEBUG[2025-08-23 16:02:01.182][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:01.183][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:01.184][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:01.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:01.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:01.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:01.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:01.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:01.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:01.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:01.196][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.197][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.199][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.204][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:01.204][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:01.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.206][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.207][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:01.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:01.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.211][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:01.212][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:01.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.214][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:01.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:01.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.219][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:01.220][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:01.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.222][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:01.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:01.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.228][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.234][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:01.235][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:01.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.237][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.238][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:01.239][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:01.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.242][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:01.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:01.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.246][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.247][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.249][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.253][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:01.254][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:01.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:01.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:01.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.261][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:01.262][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:01.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.264][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.265][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:01.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:01.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.272][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:01.273][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:01.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.275][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:01.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:01.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:01.316][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2025-08-23 16:02:01.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:01.327][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:01.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:01.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:01.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:01.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:01.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:01.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:01.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:01.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:01.346][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:01.347][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:01.348][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:01.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:01.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:01.358][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:01.358][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.359][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.362][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:01.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.374][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-23 16:02:01.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:01.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:01.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:01.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:01.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:01.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:01.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:01.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:01.392][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:01.393][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:01.394][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:01.395][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:01.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.398][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.399][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.402][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.403][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:01.404][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:01.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.406][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.407][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.408][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:01.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.420][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-23 16:02:01.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:01.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:01.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:01.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:01.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:01.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:01.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:01.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:01.438][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:01.439][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:01.440][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:01.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:01.442][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.445][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.445][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.449][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:01.450][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:01.451][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.452][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.453][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.454][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:01.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.466][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-23 16:02:01.467][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:01.468][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:01.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:01.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:01.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:01.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:01.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:01.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:01.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:01.480][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:01.483][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:01.487][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-23 16:02:01.488][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:01.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:01.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:01.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:01.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:01.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:01.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:01.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:01.499][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2025-08-23 16:02:01.500][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:01.501][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:01.506][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml.
biodb.DEBUG[2025-08-23 16:02:01.507][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:01.508][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:01.509][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:01.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:01.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:01.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:01.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:01.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:01.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:01.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:01.520][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.521][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.531][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:01.532][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:01.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.534][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.535][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:01.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:01.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.539][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:01.540][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:01.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:01.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:01.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.546][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:01.547][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:01.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.549][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:01.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:01.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.554][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.555][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.561][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:01.562][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:01.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.564][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.565][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:01.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:01.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.568][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:01.569][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:01.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.571][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.572][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:01.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:01.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.576][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.577][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.583][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:01.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:01.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.586][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:01.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:01.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.591][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:01.591][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:01.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.594][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:01.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:01.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.598][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:01.599][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:01.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.601][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.602][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:01.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:01.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:01.641][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2025-08-23 16:02:01.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:01.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:01.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:01.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:01.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:01.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:01.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:01.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:01.663][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2025-08-23 16:02:01.663][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:01.665][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:01.669][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml.
biodb.DEBUG[2025-08-23 16:02:01.670][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:01.671][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:01.672][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:01.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:01.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:01.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:01.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:01.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:01.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:01.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:01.684][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.685][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.691][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:01.692][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:01.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.695][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:01.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.699][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:01.700][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:01.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.703][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:01.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:01.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.706][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:01.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:01.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:01.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:01.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.714][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.715][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.717][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.721][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:01.722][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:01.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.724][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.725][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:01.726][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:01.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.728][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.729][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:01.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:01.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.733][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.734][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.740][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:01.741][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:01.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:01.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:01.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.748][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:01.749][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:01.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.750][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.752][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:01.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:01.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.755][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:01.756][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:01.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:01.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:01.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:01.803][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2025-08-23 16:02:01.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:01.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:01.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:01.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:01.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:01.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:01.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:01.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:01.824][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2025-08-23 16:02:01.825][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:01.826][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:01.830][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml.
biodb.DEBUG[2025-08-23 16:02:01.831][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:01.832][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:01.833][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:01.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:01.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:01.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:01.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:01.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:01.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:01.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:01.845][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.846][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.852][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:01.853][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:01.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.855][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:01.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:01.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.859][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:01.860][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:01.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:01.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:01.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.867][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:01.868][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:01.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.869][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:01.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:01.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.874][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.875][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:01.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.882][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:01.882][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:01.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.885][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:01.886][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:01.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.889][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:01.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:01.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.893][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.894][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.895][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.900][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:01.901][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:01.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:01.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:01.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.908][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:01.909][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:01.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.911][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.912][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:01.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:01.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.915][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:01.916][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:01.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.918][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:01.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:01.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:01.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:01.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:01.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:01.971][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2025-08-23 16:02:01.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:01.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:01.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:01.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:01.984][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:01.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:01.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:01.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:01.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:01.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:01.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:01.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:01.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.007][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.008][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:02.009][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:02.010][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:02.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.012][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.015][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.016][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.021][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.025][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.026][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:02.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.039][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-23 16:02:02.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.071][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.072][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:02.073][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:02.074][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:02.075][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.077][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.085][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.088][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.089][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:02.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.103][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-23 16:02:02.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.121][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.122][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:02.123][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:02.124][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:02.125][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.129][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.133][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.134][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.135][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.140][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:02.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.153][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-23 16:02:02.154][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:02.155][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-23 16:02:02.163][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:02.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:02.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.167][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:02.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:02.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.171][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:02.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:02.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-23 16:02:02.177][biodb::testThat]
biodb.INFO [2025-08-23 16:02:02.178][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-08-23 16:02:02.179][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-23 16:02:02.180][biodb::testThat]
biodb.TRACE[2025-08-23 16:02:02.183][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:02:02.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:02:02.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.187][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:02:02.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:02:02.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.191][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:02:02.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:02:02.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:02.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:02.254][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:02.256][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:02.258][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-23 16:02:02.259][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:02.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:02.282][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:02.284][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:02.286][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-23 16:02:02.287][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:02.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:02.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:02.329][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:02.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.352][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:02.353][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:02.353][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:02.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.362][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.363][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.368][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:02.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.379][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-23 16:02:02.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.397][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:02.398][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:02.399][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:02.400][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.402][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.403][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.407][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.408][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.409][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.413][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:02.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.425][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-23 16:02:02.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.442][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.443][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:02.444][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:02.445][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:02.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.450][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.451][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.453][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.454][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.455][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.457][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.460][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:02.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.472][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-23 16:02:02.473][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:02.473][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:02.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:02.486][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:02.488][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:02.490][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-23 16:02:02.491][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:02.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:02.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:02.535][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:02.537][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:02.540][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-23 16:02:02.541][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:02.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:02.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:02.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:02.607][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:02.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.625][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.626][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:02.627][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:02.627][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:02.628][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.636][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.637][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.639][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.641][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.642][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:02.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.653][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-23 16:02:02.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.671][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.672][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:02.672][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:02.673][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:02.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.678][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.683][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.687][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:02.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.699][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-23 16:02:02.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.718][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:02.719][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:02.720][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:02.720][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.724][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.725][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.726][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.728][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.729][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.729][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:02.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.731][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.733][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.734][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:02.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.746][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-23 16:02:02.747][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:02.748][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:02.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:02.760][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:02.762][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:02.764][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-23 16:02:02.765][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:02.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:02.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:02.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:02.828][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:02.830][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:02.836][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/9e2d7a19ee9cad83d9ec98e38ff7728c.content.
sched.DEBUG[2025-08-23 16:02:02.837][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:02.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:02.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:02.875][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2025-08-23 16:02:02.876][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:02.877][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:02.882][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml.
biodb.DEBUG[2025-08-23 16:02:02.883][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:02.884][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:02.885][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:02.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:02.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:02.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:02.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:02.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:02.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:02.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:02.896][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:02.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:02.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.899][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:02.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:02.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.903][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:02.904][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:02.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.907][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:02.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:02.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.911][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:02.912][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:02.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.914][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:02.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:02.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.918][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:02.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:02.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:02.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:02.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.925][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:02.926][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:02.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.928][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:02.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:02.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.933][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:02.934][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:02.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.935][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.937][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:02.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:02.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.940][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:02.941][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.943][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.944][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:02.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:02.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.948][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:02.949][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:02.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.950][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:02.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:02.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.955][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:02.956][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:02.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.958][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:02.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:02.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.963][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:02.964][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:02.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.965][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.966][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:02.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:02.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.970][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:02.971][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:02.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:02.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:02.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:02.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:02.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:02.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:02.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:02.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:02.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:02.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:02.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:03.014][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2025-08-23 16:02:03.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:03.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:03.035][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2025-08-23 16:02:03.036][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:03.037][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:03.042][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml.
biodb.DEBUG[2025-08-23 16:02:03.043][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:03.044][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:03.045][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:03.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:03.057][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.059][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.064][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:03.065][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:03.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.067][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.068][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:03.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:03.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.072][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:03.073][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:03.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:03.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:03.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.080][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:03.081][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:03.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.082][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:03.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:03.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:03.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:03.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:03.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:03.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.095][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:03.096][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:03.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.098][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:03.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:03.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.102][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:03.103][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.110][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:03.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.114][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.115][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.121][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:03.122][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:03.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.124][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:03.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:03.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.129][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:03.130][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:03.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.132][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:03.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:03.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.136][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:03.137][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:03.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:03.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:03.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:03.179][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2025-08-23 16:02:03.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:03.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:03.200][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2025-08-23 16:02:03.201][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:03.202][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:03.207][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml.
biodb.DEBUG[2025-08-23 16:02:03.208][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:03.209][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:03.210][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:03.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:03.221][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.222][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.224][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.229][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:03.230][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:03.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.232][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.233][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:03.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:03.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.237][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:03.238][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:03.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.240][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:03.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:03.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.244][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:03.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:03.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:03.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:03.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.252][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:03.253][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:03.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.254][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:03.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:03.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.259][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:03.260][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:03.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.263][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:03.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:03.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.267][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:03.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.271][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:03.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.274][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.275][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.277][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.282][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:03.283][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:03.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:03.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:03.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.290][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:03.291][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:03.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.294][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:03.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:03.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.297][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:03.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:03.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.300][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:03.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:03.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:03.341][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2025-08-23 16:02:03.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:03.354][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:03.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:03.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.375][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.376][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:03.377][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:03.378][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:03.379][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.387][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.388][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.391][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.392][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:03.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.404][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-23 16:02:03.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:03.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.422][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:03.423][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:03.423][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:03.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.428][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.429][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.432][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.433][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.438][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:03.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.449][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2025-08-23 16:02:03.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:03.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.467][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.468][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:03.468][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:03.469][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:03.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.474][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.478][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.479][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.484][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:03.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.496][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2025-08-23 16:02:03.497][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:03.497][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-23 16:02:03.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:03.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:03.561][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:03.563][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:03.565][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-23 16:02:03.566][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-23 16:02:03.568][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:03.571][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:03.573][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-23 16:02:03.574][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:03.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:03.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:03.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:03.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:03.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:03.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:03.639][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:03.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:03.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.657][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:03.658][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:03.659][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:03.660][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.663][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.669][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.673][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:03.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-23 16:02:03.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:03.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.702][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.703][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:03.704][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:03.705][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:03.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.714][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.714][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.718][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.719][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:03.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.731][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-23 16:02:03.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:03.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.749][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.750][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:03.750][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:03.751][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:03.752][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.757][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.761][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:03.762][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.766][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:03.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.778][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-23 16:02:03.779][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:03.780][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:03.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:03.793][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:03.795][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:03.800][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/ca8f292aaf9d7e19110a4d4f8e8081db.content.
sched.DEBUG[2025-08-23 16:02:03.801][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:03.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:03.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:03.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:03.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:03.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:03.853][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2025-08-23 16:02:03.854][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:03.855][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:03.859][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml.
biodb.DEBUG[2025-08-23 16:02:03.860][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:03.861][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:03.862][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:03.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:03.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:03.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:03.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:03.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:03.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:03.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:03.878][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.879][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.885][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:03.886][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:03.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.889][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:03.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:03.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.892][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:03.893][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:03.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.895][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:03.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:03.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.900][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:03.901][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:03.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:03.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:03.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.907][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:03.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:03.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.910][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:03.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:03.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.915][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:03.916][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:03.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.918][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:03.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:03.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.922][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:03.923][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.925][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.926][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:03.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:03.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.929][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.932][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.937][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:03.938][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:03.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:03.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:03.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.944][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:03.945][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:03.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.948][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:03.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:03.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.952][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:03.953][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:03.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.954][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:03.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:03.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:03.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:03.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:03.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:03.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:03.995][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2025-08-23 16:02:03.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:03.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:03.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:04.008][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:04.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:04.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.026][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:04.027][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:04.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:04.028][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:04.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:04.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.033][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:04.038][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:04.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.043][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:04.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.055][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-23 16:02:04.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:04.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.072][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:04.073][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:04.074][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:04.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:04.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:04.077][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.078][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:04.085][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:04.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.089][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.089][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:04.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.102][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-23 16:02:04.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:04.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.123][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:04.124][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:04.125][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:04.126][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:04.127][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:04.127][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.128][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.130][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.131][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.132][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:04.135][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:04.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.140][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:04.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.152][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2025-08-23 16:02:04.153][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:04.153][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:04.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:04.165][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:04.168][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:04.171][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-23 16:02:04.172][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:04.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:04.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:04.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:04.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:04.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:04.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:04.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:04.243][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2025-08-23 16:02:04.244][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:04.245][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:04.249][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml.
biodb.DEBUG[2025-08-23 16:02:04.250][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:04.251][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:04.252][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:04.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:04.264][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.265][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.267][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.271][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:04.272][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:04.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.275][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:04.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:04.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.279][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:04.280][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:04.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.282][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:04.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:04.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.287][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:04.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:04.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:04.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:04.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.294][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.295][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.302][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:04.303][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:04.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.304][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.305][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:04.306][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:04.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.309][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:04.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:04.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.313][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.314][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.316][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.320][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:04.321][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:04.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:04.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:04.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.328][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:04.329][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:04.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.332][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:04.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:04.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.336][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:04.337][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:04.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.338][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:04.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:04.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:04.389][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2025-08-23 16:02:04.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:04.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:04.410][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2025-08-23 16:02:04.411][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:04.412][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:04.417][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml.
biodb.DEBUG[2025-08-23 16:02:04.418][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:04.419][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:04.420][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:04.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:04.432][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.433][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.439][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:04.440][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:04.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.442][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.443][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:04.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:04.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.447][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:04.448][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:04.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.449][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:04.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:04.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.454][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:04.455][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:04.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:04.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:04.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.461][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.462][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.469][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:04.470][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:04.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.471][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.473][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:04.474][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:04.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.476][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:04.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:04.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.480][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.481][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.488][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:04.488][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:04.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.490][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:04.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:04.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.495][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:04.496][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:04.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.498][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.499][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:04.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:04.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:04.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:04.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.505][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.506][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:04.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:04.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:04.547][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2025-08-23 16:02:04.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:04.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:04.568][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2025-08-23 16:02:04.569][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:04.571][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:04.575][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml.
biodb.DEBUG[2025-08-23 16:02:04.576][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:04.577][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:04.578][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:04.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:04.590][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.591][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.598][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:04.599][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:04.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.601][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.602][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:04.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:04.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.606][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:04.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:04.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.608][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:04.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:04.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.613][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:04.614][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:04.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.616][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:04.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:04.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.621][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.622][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.624][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.629][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:04.630][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:04.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.633][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:04.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:04.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.636][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:04.637][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:04.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.639][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.640][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:04.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:04.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.649][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.656][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:04.657][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:04.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.659][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:04.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:04.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.664][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:04.664][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:04.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.667][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:04.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:04.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.671][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:04.672][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:04.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.674][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:04.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:04.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:04.714][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2025-08-23 16:02:04.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:04.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:04.735][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2025-08-23 16:02:04.736][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:04.737][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:04.742][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml.
biodb.DEBUG[2025-08-23 16:02:04.743][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:04.744][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:04.745][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:04.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:04.756][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.764][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:04.765][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:04.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.767][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.768][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:04.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:04.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.772][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:04.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:04.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.774][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:04.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:04.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.779][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:04.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:04.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:04.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:04.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.787][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.788][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.789][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.794][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:04.795][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:04.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.797][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.798][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:04.799][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:04.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.802][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:04.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:04.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.805][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.808][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.813][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:04.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:04.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.816][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:04.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:04.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.821][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:04.821][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:04.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.823][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.824][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:04.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:04.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.828][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:04.829][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:04.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.831][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:04.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:04.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:04.872][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2025-08-23 16:02:04.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:04.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:04.893][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2025-08-23 16:02:04.894][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:04.896][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:04.900][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml.
biodb.DEBUG[2025-08-23 16:02:04.901][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:04.906][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:04.907][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:04.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:04.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:04.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:04.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:04.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:04.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:04.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:04.919][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.922][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:04.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:04.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.927][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:04.928][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:04.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.929][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.930][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:04.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:04.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.934][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:04.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:04.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:04.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:04.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.942][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:04.943][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:04.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:04.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:04.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.950][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:04.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.956][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:04.957][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:04.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.960][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:04.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:04.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.963][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.964][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:04.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:04.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.968][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.969][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.970][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:04.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.975][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:04.976][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:04.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:04.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:04.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.982][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:04.983][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:04.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.985][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.986][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:04.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:04.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.990][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:04.991][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:04.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:04.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:04.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:04.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:04.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:04.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:05.034][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2025-08-23 16:02:05.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:05.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:05.055][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2025-08-23 16:02:05.056][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:05.057][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:05.061][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml.
biodb.DEBUG[2025-08-23 16:02:05.062][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:05.063][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:05.064][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:05.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.076][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.084][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:05.085][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:05.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.088][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:05.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:05.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.092][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:05.093][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:05.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.095][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:05.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:05.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.099][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:05.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:05.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.102][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:05.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:05.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.107][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:05.108][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:05.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:05.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:05.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.114][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:05.115][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:05.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.117][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.118][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:05.119][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.122][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:05.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.126][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.127][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.133][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:05.134][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:05.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.136][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.137][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:05.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:05.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.141][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:05.142][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:05.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.144][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.145][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:05.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:05.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.148][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:05.149][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:05.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.152][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:05.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:05.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:05.197][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2025-08-23 16:02:05.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:05.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:05.218][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2025-08-23 16:02:05.218][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:05.220][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:05.224][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml.
biodb.DEBUG[2025-08-23 16:02:05.225][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:05.226][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:05.227][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:05.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.238][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.239][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.246][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:05.247][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:05.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.249][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.250][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:05.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:05.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.253][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:05.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:05.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:05.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:05.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:05.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:05.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.264][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:05.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:05.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.269][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:05.269][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:05.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.271][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:05.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:05.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.276][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:05.277][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:05.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.279][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.280][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:05.281][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.282][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.284][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:05.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.295][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:05.296][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:05.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.298][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:05.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:05.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.303][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:05.304][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:05.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.306][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:05.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:05.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.310][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:05.311][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:05.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.313][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:05.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:05.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:05.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:05.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:05.354][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2025-08-23 16:02:05.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:05.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:05.366][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:05.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.385][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:05.386][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:05.387][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:05.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.389][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.393][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.394][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.395][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.397][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.401][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.402][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:05.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.414][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-23 16:02:05.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.436][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.437][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:05.437][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:05.438][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:05.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.447][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.448][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.452][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:05.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.464][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2025-08-23 16:02:05.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.481][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.482][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:05.483][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:05.484][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:05.485][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.488][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.494][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.498][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:05.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.510][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2025-08-23 16:02:05.511][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:05.512][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-23 16:02:05.519][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:05.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:05.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.523][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:05.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:05.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.526][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:05.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:05.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-23 16:02:05.532][biodb::testThat]
biodb.INFO [2025-08-23 16:02:05.533][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-08-23 16:02:05.534][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-23 16:02:05.535][biodb::testThat]
biodb.TRACE[2025-08-23 16:02:05.538][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:02:05.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:02:05.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.541][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:02:05.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:02:05.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.545][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:02:05.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:02:05.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:05.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:05.607][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:05.609][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:05.611][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-23 16:02:05.612][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:05.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:05.635][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:05.637][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:05.639][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-23 16:02:05.640][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:05.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:05.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:05.687][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:05.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.705][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:05.706][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:05.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:05.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.710][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.715][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.716][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.717][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.718][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.721][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:05.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.733][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-23 16:02:05.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.751][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:05.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:05.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:05.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.759][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.762][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.763][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.764][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.767][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:05.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.779][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-23 16:02:05.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.797][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.798][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:05.799][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:05.800][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:05.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.806][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.808][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.810][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.814][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:05.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.826][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-23 16:02:05.827][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:05.828][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:05.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:05.841][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:05.843][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:05.845][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-23 16:02:05.846][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:05.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:05.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:05.889][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:05.891][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:05.894][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-23 16:02:05.895][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:05.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:05.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:05.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:05.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:05.962][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:05.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:05.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:05.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:05.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:05.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:05.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:05.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:05.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.980][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:05.981][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:05.982][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:05.983][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.992][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:05.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:05.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:05.996][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:05.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:05.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.008][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-23 16:02:06.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.026][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:06.027][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:06.028][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:06.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.036][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.038][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.041][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.042][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:06.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.054][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-23 16:02:06.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.072][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.073][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:06.073][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:06.074][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:06.075][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.077][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.083][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.084][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.088][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.089][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:06.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.101][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-23 16:02:06.102][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:06.103][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:06.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:06.115][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:06.118][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:06.120][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-23 16:02:06.121][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:06.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:06.287][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:06.290][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:06.292][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-23 16:02:06.293][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:06.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:06.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.355][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:06.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.374][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:06.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:06.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:06.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.379][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.381][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.382][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.383][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.384][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.386][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.388][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.390][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.391][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:06.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.403][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-23 16:02:06.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.422][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:06.423][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:06.424][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:06.425][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.430][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.431][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.438][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.439][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.444][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:06.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.456][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-23 16:02:06.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.473][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.474][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:06.475][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:06.476][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:06.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.485][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.490][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:06.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-23 16:02:06.503][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:06.503][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-23 16:02:06.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:06.576][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:06.579][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:06.580][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-23 16:02:06.581][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-23 16:02:06.584][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:06.586][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:06.588][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-23 16:02:06.589][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:06.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.652][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:06.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.671][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:06.672][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:06.673][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:06.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.678][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.683][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.692][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:06.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.704][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-23 16:02:06.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.722][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:06.723][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:06.724][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:06.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.728][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.733][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.734][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.737][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.738][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:06.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.750][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-23 16:02:06.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.767][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.768][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:06.769][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:06.770][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:06.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.772][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.773][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.774][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.778][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.780][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.783][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.784][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:06.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.796][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-23 16:02:06.797][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:06.798][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:06.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:06.810][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:06.813][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:06.815][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-23 16:02:06.816][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:06.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:06.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:06.879][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:06.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.896][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.897][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:06.898][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:06.899][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:06.900][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.901][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.902][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.904][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.909][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.914][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:06.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.926][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-23 16:02:06.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.948][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.949][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:06.950][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:06.951][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:06.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.953][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.955][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.956][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.959][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.960][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.964][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.965][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:06.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.977][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-23 16:02:06.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:06.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:06.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:06.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:06.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:06.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:06.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:06.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:06.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:06.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.995][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:06.996][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:06.996][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:06.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:06.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:06.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.004][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.005][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:07.006][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:07.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.010][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.011][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:07.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.023][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-23 16:02:07.023][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:07.024][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:07.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:07.037][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:07.039][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:07.043][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-23 16:02:07.044][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:07.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:07.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:07.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:07.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:07.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:07.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:07.108][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:07.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:07.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.126][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:07.127][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:07.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:07.129][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:07.130][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:07.131][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.132][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.135][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.136][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.137][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:07.139][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:07.140][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.141][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.144][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:07.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.156][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-23 16:02:07.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:07.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.173][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:07.174][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:07.175][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:07.176][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:07.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:07.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.184][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:07.186][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:07.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.190][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.191][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:07.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.208][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-23 16:02:07.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:07.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:07.226][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:07.227][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:07.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:07.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:07.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.232][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:07.238][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:07.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.242][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:07.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.254][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-23 16:02:07.255][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:07.256][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-23 16:02:07.271][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:07.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.275][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:07.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:07.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.278][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:07.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:07.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.284][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:07.285][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:07.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.287][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.288][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.289][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.290][ef$get] fields variable is a list.
biodb.INFO [2025-08-23 16:02:07.292][biodb::testThat]
biodb.INFO [2025-08-23 16:02:07.293][biodb::testThat] Running test function test.annotateMzValues_real_values (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-08-23 16:02:07.294][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-23 16:02:07.294][biodb::testThat]
biodb.TRACE[2025-08-23 16:02:07.297][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:02:07.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:02:07.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.301][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:02:07.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:02:07.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.304][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:02:07.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:02:07.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:07.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:07.365][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:07.367][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:07.374][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/b616afd034ed5d04cbb32f1e92c778e7.content.
sched.DEBUG[2025-08-23 16:02:07.375][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:07.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:07.388][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2025-08-23 16:02:07.389][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:07.391][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:07.394][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml.
biodb.DEBUG[2025-08-23 16:02:07.395][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:07.397][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:07.398][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:07.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:07.409][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.410][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.417][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:07.418][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:07.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.421][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:07.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:07.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.425][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:07.425][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:07.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.427][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:07.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:07.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.432][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:07.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:07.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.435][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:07.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:07.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.440][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.441][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.448][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:07.449][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:07.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.451][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:07.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:07.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.460][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:07.461][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.464][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:07.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.468][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.471][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.476][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:07.476][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:07.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.478][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.479][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:07.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:07.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.483][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:07.484][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:07.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.486][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.487][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:07.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:07.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.491][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:07.491][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:07.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.493][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.494][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:07.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:07.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:07.534][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2025-08-23 16:02:07.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:07.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:07.555][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2025-08-23 16:02:07.556][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:07.557][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:07.561][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml.
biodb.DEBUG[2025-08-23 16:02:07.562][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:07.563][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:07.565][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:07.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:07.576][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.584][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:07.585][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:07.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.587][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.588][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:07.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:07.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.592][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:07.592][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:07.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.594][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:07.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:07.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.599][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:07.600][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:07.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:07.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:07.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.607][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.608][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.609][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.614][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:07.615][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:07.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.617][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.618][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:07.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:07.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.622][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:07.623][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.626][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:07.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.637][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:07.638][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:07.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:07.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:07.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.645][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:07.646][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:07.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.648][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.649][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:07.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:07.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.653][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:07.653][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:07.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:07.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:07.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:07.697][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2025-08-23 16:02:07.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:07.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:07.724][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2025-08-23 16:02:07.725][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:07.726][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:07.731][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml.
biodb.DEBUG[2025-08-23 16:02:07.732][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:07.733][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:07.734][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:07.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:07.746][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.747][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.753][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:07.754][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:07.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.757][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:07.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:07.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.761][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:07.762][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:07.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:07.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:07.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:07.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:07.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:07.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:07.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.776][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.777][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.792][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:07.793][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:07.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.797][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:07.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.801][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:07.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.805][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.808][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.814][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:07.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:07.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.817][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:07.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:07.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.823][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:07.824][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:07.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.827][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:07.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:07.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.831][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:07.832][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:07.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:07.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:07.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:07.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:07.882][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2025-08-23 16:02:07.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:07.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:07.908][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2025-08-23 16:02:07.909][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:07.911][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:07.914][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml.
biodb.DEBUG[2025-08-23 16:02:07.916][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:07.917][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:07.918][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:07.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:07.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:07.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:07.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:07.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:07.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:07.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:07.932][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.933][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.935][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:07.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:07.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.941][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:07.942][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:07.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.945][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:07.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:07.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.949][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:07.950][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:07.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:07.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:07.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.957][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:07.959][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:07.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.960][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:07.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:07.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.967][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:07.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.974][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:07.975][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:07.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.977][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.978][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:07.979][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.982][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:07.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:07.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.987][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.988][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:07.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.995][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:07.996][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:07.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:07.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:07.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:08.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:08.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.003][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:08.004][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:08.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.016][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.018][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:08.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:08.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.022][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:08.023][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:08.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.025][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:08.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:08.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:08.069][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2025-08-23 16:02:08.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:08.082][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:08.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:08.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:08.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:08.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:08.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:08.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:08.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:08.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.099][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:08.100][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:08.101][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:08.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:08.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:08.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:08.112][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:08.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.115][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.116][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:08.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.128][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-23 16:02:08.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:08.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:08.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:08.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:08.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:08.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:08.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:08.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:08.147][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:08.147][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:08.148][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:08.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:08.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.153][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:08.158][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:08.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.162][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.163][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:08.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.175][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-08-23 16:02:08.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:08.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:08.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:08.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:08.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:08.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:08.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:08.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:08.193][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:08.194][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:08.195][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:08.196][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:08.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.200][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.203][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.204][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:08.205][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:08.206][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.207][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.210][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:08.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-08-23 16:02:08.223][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:08.224][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:08.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:08.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:08.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:08.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:08.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:08.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:08.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:08.236][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:08.239][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:08.244][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/4da83335ec00090f05f0a5128074d1f6.content.
sched.DEBUG[2025-08-23 16:02:08.245][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:08.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:08.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:08.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:08.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:08.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:08.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:08.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:08.257][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2025-08-23 16:02:08.258][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:08.259][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:08.263][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml.
biodb.DEBUG[2025-08-23 16:02:08.264][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:08.265][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:08.266][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:08.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:08.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:08.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:08.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:08.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:08.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:08.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:08.283][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.284][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.290][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:08.291][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:08.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.294][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:08.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:08.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.298][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:08.299][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:08.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.302][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:08.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:08.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.306][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:08.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:08.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:08.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:08.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.313][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.314][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.316][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.321][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:08.321][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:08.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.324][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:08.325][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.327][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.328][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:08.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.332][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.333][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.339][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:08.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:08.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.342][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:08.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:08.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.347][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:08.348][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:08.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.350][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.351][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:08.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:08.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.354][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:08.355][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:08.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.357][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:08.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:08.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:08.398][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2025-08-23 16:02:08.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:08.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:08.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:08.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:08.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:08.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:08.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:08.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:08.420][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2025-08-23 16:02:08.421][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:08.422][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:08.427][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml.
biodb.DEBUG[2025-08-23 16:02:08.428][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:08.429][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:08.430][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:08.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:08.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:08.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:08.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:08.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:08.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:08.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:08.442][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.443][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.445][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.450][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:08.451][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:08.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.453][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.454][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:08.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:08.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.458][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:08.459][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:08.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.461][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:08.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:08.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.465][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:08.466][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:08.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.468][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:08.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:08.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.473][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.474][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.480][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:08.481][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:08.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.484][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:08.485][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.488][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:08.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.492][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.493][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.499][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:08.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:08.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:08.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:08.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.507][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:08.508][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:08.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.511][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:08.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:08.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.514][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:08.515][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:08.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:08.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:08.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:08.564][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2025-08-23 16:02:08.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:08.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:08.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:08.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:08.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:08.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:08.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:08.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:08.585][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2025-08-23 16:02:08.586][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:08.587][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:08.590][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml.
biodb.DEBUG[2025-08-23 16:02:08.591][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:08.593][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:08.594][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:08.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:08.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:08.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:08.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:08.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:08.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:08.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:08.605][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.606][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.608][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.613][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:08.614][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:08.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.615][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.616][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:08.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:08.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.620][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:08.621][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:08.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:08.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:08.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.628][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:08.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:08.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:08.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:08.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.636][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.638][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.643][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:08.644][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:08.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.646][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:08.647][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.649][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.650][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:08.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.662][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:08.663][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:08.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.664][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:08.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:08.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.669][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:08.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:08.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.673][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:08.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:08.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.677][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:08.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:08.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:08.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:08.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:08.721][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2025-08-23 16:02:08.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:08.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:08.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:08.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:08.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:08.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:08.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:08.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:08.743][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2025-08-23 16:02:08.744][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:08.745][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:08.749][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml.
biodb.DEBUG[2025-08-23 16:02:08.750][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:08.751][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:08.753][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:08.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:08.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:08.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:08.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:08.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:08.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:08.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:08.765][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.766][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.767][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.772][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:08.773][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:08.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.776][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:08.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:08.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.780][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:08.781][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:08.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.783][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:08.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:08.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.788][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:08.789][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:08.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:08.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:08.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.800][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.801][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.808][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:08.809][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:08.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.811][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:08.812][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.814][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.815][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:08.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.819][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.820][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.826][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:08.827][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:08.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.829][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:08.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:08.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.834][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:08.835][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:08.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.836][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.838][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:08.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:08.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.841][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:08.842][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:08.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.844][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:08.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:08.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:08.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:08.885][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2025-08-23 16:02:08.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:08.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:08.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:08.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:08.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:08.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:08.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:08.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:08.906][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2025-08-23 16:02:08.907][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:08.909][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:08.913][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml.
biodb.DEBUG[2025-08-23 16:02:08.914][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:08.915][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:08.916][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:08.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:08.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:08.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:08.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:08.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:08.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:08.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:08.928][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.929][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:08.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:08.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.935][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:08.936][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:08.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.939][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:08.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:08.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.943][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:08.944][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:08.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.946][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.947][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:08.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:08.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.950][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:08.951][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:08.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:08.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:08.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.958][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.959][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.961][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:08.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.965][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:08.966][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:08.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.969][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:08.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:08.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.973][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:08.974][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.977][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:08.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:08.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.981][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:08.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.988][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:08.989][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:08.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.991][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:08.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:08.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:08.996][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:08.997][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:08.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:08.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.000][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:09.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:09.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.003][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:09.004][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:09.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:09.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:09.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:09.052][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2025-08-23 16:02:09.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:09.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:09.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:09.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:09.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:09.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:09.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:09.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:09.073][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2025-08-23 16:02:09.074][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:09.075][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:09.080][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml.
biodb.DEBUG[2025-08-23 16:02:09.080][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:09.082][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:09.083][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:09.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:09.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:09.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:09.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:09.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:09.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:09.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:09.094][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.095][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.101][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:09.102][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:09.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.104][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.105][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:09.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:09.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.109][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:09.110][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:09.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:09.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:09.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.116][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:09.117][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:09.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:09.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:09.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.124][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.125][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.126][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.131][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:09.132][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:09.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.135][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:09.136][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.138][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.139][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:09.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.142][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.143][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.145][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.150][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:09.151][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:09.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:09.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:09.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.157][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:09.158][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:09.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:09.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:09.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.165][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:09.166][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:09.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.169][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:09.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:09.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:09.209][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2025-08-23 16:02:09.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:09.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:09.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:09.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:09.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:09.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:09.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:09.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:09.230][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2025-08-23 16:02:09.231][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:09.233][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:09.237][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml.
biodb.DEBUG[2025-08-23 16:02:09.238][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:09.239][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:09.240][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:09.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:09.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:09.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:09.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:09.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:09.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:09.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:09.252][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.253][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.255][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.260][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:09.261][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:09.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.264][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:09.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:09.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.267][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:09.268][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:09.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.271][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:09.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:09.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.275][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:09.276][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:09.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:09.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:09.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.282][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.283][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.290][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:09.291][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:09.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.294][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:09.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:09.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.298][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:09.299][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.306][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:09.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.310][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.311][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.312][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.317][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:09.318][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:09.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:09.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:09.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.325][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:09.326][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:09.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.327][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.328][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:09.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:09.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.332][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:09.333][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:09.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:09.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:09.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:09.375][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2025-08-23 16:02:09.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:09.387][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:09.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:09.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:09.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:09.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:09.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:09.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:09.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:09.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:09.406][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:09.407][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:09.408][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:09.408][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:09.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.416][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.417][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:09.417][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:09.418][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.419][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.421][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.422][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:09.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.434][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-08-23 16:02:09.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:09.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:09.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:09.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:09.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:09.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:09.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:09.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.452][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:09.452][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:09.453][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:09.454][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:09.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:09.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.457][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.462][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.463][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:09.464][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:09.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.468][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.469][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:09.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.481][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-08-23 16:02:09.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:09.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:09.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:09.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:09.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:09.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:09.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:09.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:09.499][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:09.500][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:09.501][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:09.502][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:09.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.505][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.507][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.509][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.510][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:09.511][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:09.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.515][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:09.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.527][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-08-23 16:02:09.528][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:09.529][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:09.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:09.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:09.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:09.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:09.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:09.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:09.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:09.542][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:09.544][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:09.546][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d4eeadefe2fd6c7a45a5c47263c29105.content.
sched.DEBUG[2025-08-23 16:02:09.547][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:09.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:09.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:09.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:09.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:09.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:09.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:09.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:09.562][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2025-08-23 16:02:09.563][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:09.565][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:09.568][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml.
biodb.DEBUG[2025-08-23 16:02:09.569][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:09.570][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:09.571][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:09.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:09.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:09.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:09.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:09.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:09.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:09.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:09.582][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.583][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.585][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.590][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:09.591][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:09.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.592][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.593][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:09.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:09.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.597][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:09.598][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:09.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.600][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:09.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:09.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:09.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:09.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.607][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:09.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:09.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.612][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.613][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.615][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.619][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:09.620][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:09.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.622][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.623][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:09.624][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.626][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.627][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:09.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.631][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.638][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:09.639][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:09.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.641][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:09.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:09.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.645][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:09.646][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:09.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.648][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.649][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:09.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:09.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.653][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:09.654][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:09.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.657][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:09.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:09.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:09.697][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2025-08-23 16:02:09.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:09.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:09.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:09.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:09.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:09.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:09.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:09.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:09.718][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2025-08-23 16:02:09.719][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:09.720][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:09.723][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml.
biodb.DEBUG[2025-08-23 16:02:09.724][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:09.725][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:09.726][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:09.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:09.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:09.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:09.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:09.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:09.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:09.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:09.738][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.746][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:09.747][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:09.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.750][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:09.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:09.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.753][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:09.754][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:09.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:09.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:09.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.761][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:09.762][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:09.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:09.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:09.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.769][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.770][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.772][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.777][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:09.778][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:09.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.780][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:09.781][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.783][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.784][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:09.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.796][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:09.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:09.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:09.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:09.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.824][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:09.825][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:09.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.827][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.828][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:09.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:09.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.832][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:09.833][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:09.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:09.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:09.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:09.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:09.876][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2025-08-23 16:02:09.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:09.888][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:09.891][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:09.893][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8a1fe476d9f07138803c04b6da6259b3.content.
sched.DEBUG[2025-08-23 16:02:09.894][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:09.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:09.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:09.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:09.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:09.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:09.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:09.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:09.905][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2025-08-23 16:02:09.906][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:09.908][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:09.911][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml.
biodb.DEBUG[2025-08-23 16:02:09.912][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:09.913][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:09.914][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:09.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:09.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:09.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:09.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:09.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:09.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:09.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:09.926][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.927][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.929][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:09.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:09.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.934][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:09.934][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:09.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.936][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.937][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:09.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:09.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.941][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:09.942][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:09.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.945][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:09.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:09.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.949][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:09.950][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:09.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:09.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:09.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.957][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.958][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:09.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.964][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:09.965][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:09.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.968][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:09.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:09.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.972][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:09.973][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.975][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.976][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:09.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:09.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.980][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.981][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:09.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.987][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:09.988][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:09.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:09.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:09.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.995][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:09.996][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:09.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:09.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:09.999][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:10.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:10.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.003][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:10.004][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:10.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.005][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:10.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:10.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:10.048][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2025-08-23 16:02:10.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:10.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:10.069][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2025-08-23 16:02:10.070][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:10.072][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:10.075][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml.
biodb.DEBUG[2025-08-23 16:02:10.076][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:10.077][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:10.078][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:10.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.095][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.096][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.102][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:10.103][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:10.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.106][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:10.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:10.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.110][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:10.110][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:10.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:10.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:10.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.117][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:10.118][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:10.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:10.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:10.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.124][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:10.125][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:10.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.127][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:10.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:10.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.132][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:10.133][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:10.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.136][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:10.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:10.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.139][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:10.140][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.142][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.143][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:10.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.147][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:10.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:10.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:10.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:10.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.154][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:10.155][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:10.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.157][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:10.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:10.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.162][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:10.163][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:10.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.165][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:10.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:10.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.169][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:10.170][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:10.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:10.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:10.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:10.213][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2025-08-23 16:02:10.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:10.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:10.235][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2025-08-23 16:02:10.236][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:10.237][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:10.241][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml.
biodb.DEBUG[2025-08-23 16:02:10.242][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:10.243][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:10.244][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:10.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.256][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.257][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.264][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:10.265][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:10.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.266][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.267][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:10.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:10.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.271][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:10.272][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:10.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.275][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:10.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:10.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.279][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:10.280][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:10.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.282][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:10.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:10.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.286][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:10.287][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:10.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:10.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:10.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.294][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:10.295][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:10.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.298][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:10.299][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.302][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:10.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:10.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:10.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:10.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:10.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.313][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:10.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:10.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.316][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:10.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:10.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.321][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:10.322][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:10.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.325][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:10.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:10.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.328][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:10.329][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:10.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:10.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:10.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:10.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:10.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:10.377][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2025-08-23 16:02:10.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:10.389][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:10.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.407][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.407][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:10.408][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:10.409][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:10.410][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.414][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.415][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.417][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.419][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.423][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:10.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.436][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-08-23 16:02:10.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.453][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.454][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:10.455][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:10.456][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:10.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.461][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.462][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.466][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.471][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:10.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.483][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-08-23 16:02:10.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.501][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:10.502][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:10.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:10.504][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.505][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.509][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.513][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.518][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:10.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.530][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-08-23 16:02:10.531][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:10.532][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:10.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:10.559][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:10.561][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:10.563][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-23 16:02:10.564][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:10.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:10.586][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:10.593][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:10.595][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-23 16:02:10.596][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:10.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:10.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:10.638][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:10.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.656][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.657][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:10.658][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:10.659][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:10.659][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.663][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.668][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.673][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:10.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-23 16:02:10.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.703][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.704][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:10.704][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:10.705][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:10.706][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.710][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.714][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.714][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.715][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.720][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:10.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-23 16:02:10.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.750][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.750][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:10.751][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:10.752][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:10.753][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.755][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.757][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.759][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.761][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.762][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.767][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:10.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.779][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-23 16:02:10.780][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:10.781][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:10.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:10.793][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:10.796][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:10.798][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-23 16:02:10.798][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:10.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:10.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:10.846][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:10.848][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:10.851][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-23 16:02:10.852][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:10.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:10.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:10.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:10.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:10.914][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:10.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.932][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:10.933][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:10.934][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:10.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.943][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.944][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.948][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.949][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:10.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.961][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-23 16:02:10.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:10.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:10.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:10.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:10.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:10.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:10.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:10.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.979][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:10.980][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:10.981][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:10.982][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.985][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.989][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.991][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:10.992][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.993][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:10.995][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:10.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:10.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:10.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.008][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-23 16:02:11.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.026][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:11.027][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:11.028][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:11.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.036][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.038][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.041][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.042][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:11.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.054][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-23 16:02:11.055][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:11.056][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:11.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:11.069][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:11.071][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:11.073][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-23 16:02:11.074][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:11.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:11.242][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:11.245][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:11.247][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-23 16:02:11.247][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:11.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.311][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:11.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.329][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.330][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:11.331][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:11.332][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:11.333][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.335][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.342][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.344][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.350][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.351][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:11.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.363][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-23 16:02:11.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.381][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.382][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:11.382][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:11.383][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:11.384][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.385][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.386][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.388][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.389][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.391][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.392][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.393][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.398][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:11.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-23 16:02:11.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.428][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:11.429][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:11.430][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:11.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.436][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.440][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:11.441][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.442][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.444][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:11.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.457][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-23 16:02:11.457][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:11.458][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:11.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:11.485][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:11.488][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:11.491][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/52d6fe8916b2b36c38f3e0a454a0ac24.content.
sched.DEBUG[2025-08-23 16:02:11.492][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:11.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:11.543][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2025-08-23 16:02:11.544][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:11.545][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:11.550][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml.
biodb.DEBUG[2025-08-23 16:02:11.551][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:11.552][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:11.553][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:11.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.565][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.567][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.572][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:11.573][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:11.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.575][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:11.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:11.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.580][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:11.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:11.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:11.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:11.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.587][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:11.588][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:11.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:11.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:11.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:11.596][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:11.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:11.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:11.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.607][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:11.608][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:11.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.610][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.611][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:11.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:11.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.615][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:11.616][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.618][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.619][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:11.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.622][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:11.623][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:11.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:11.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:11.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.630][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:11.631][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:11.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:11.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:11.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.637][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:11.638][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:11.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.641][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:11.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:11.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.645][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:11.646][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:11.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.648][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.649][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:11.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:11.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.689][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2025-08-23 16:02:11.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:11.730][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2025-08-23 16:02:11.731][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:11.732][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:11.736][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml.
biodb.DEBUG[2025-08-23 16:02:11.737][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:11.738][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:11.740][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:11.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.751][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.752][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.754][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.759][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:11.760][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:11.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.763][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:11.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:11.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.766][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:11.767][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:11.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.769][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:11.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:11.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:11.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:11.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:11.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:11.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:11.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:11.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:11.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:11.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.789][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:11.790][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:11.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.793][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:11.794][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.797][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:11.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.801][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:11.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:11.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:11.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:11.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.808][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:11.809][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:11.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.811][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:11.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:11.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.816][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:11.817][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:11.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.820][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:11.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:11.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.823][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:11.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:11.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:11.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:11.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.872][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2025-08-23 16:02:11.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:11.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:11.893][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2025-08-23 16:02:11.894][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:11.895][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:11.898][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml.
biodb.DEBUG[2025-08-23 16:02:11.899][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:11.900][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:11.901][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:11.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:11.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:11.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:11.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:11.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:11.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:11.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:11.912][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.913][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.915][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.920][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:11.921][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:11.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.924][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:11.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:11.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.927][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:11.928][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:11.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:11.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:11.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.935][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:11.936][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:11.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.939][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:11.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:11.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.942][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:11.943][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:11.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.946][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:11.947][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.950][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:11.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:11.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.954][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:11.955][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:11.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:11.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:11.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.961][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:11.962][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:11.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.964][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:11.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:11.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.969][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:11.970][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:11.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.973][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:11.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:11.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.976][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:11.977][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:11.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:11.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:11.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:11.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:11.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:11.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:11.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:11.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:12.021][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2025-08-23 16:02:12.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:12.033][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:12.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:12.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.051][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.052][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:12.053][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:12.054][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:12.054][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.059][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.062][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.063][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.064][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.064][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.067][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.068][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:12.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.080][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-23 16:02:12.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:12.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.098][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.099][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:12.099][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:12.100][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:12.101][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.115][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.118][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.119][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:12.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.131][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-08-23 16:02:12.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:12.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.148][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.149][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:12.150][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:12.151][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:12.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.155][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.159][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.160][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.161][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.165][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:12.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.177][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-08-23 16:02:12.178][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:12.179][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:12.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:12.191][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:12.194][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:12.199][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a1f794ee7474001c459ff6d20307d75d.content.
sched.DEBUG[2025-08-23 16:02:12.200][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:12.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:12.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:12.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:12.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:12.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:12.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:12.266][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:12.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:12.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.284][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.284][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:12.285][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:12.286][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:12.287][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.288][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.291][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.292][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.296][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.297][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.300][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.301][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:12.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-23 16:02:12.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:12.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.331][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:12.332][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:12.333][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:12.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.335][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.338][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.339][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.341][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.342][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.343][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.347][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.348][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:12.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.365][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-23 16:02:12.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:12.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.383][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:12.384][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:12.385][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:12.386][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.388][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.390][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.395][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:12.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.399][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:12.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.411][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-23 16:02:12.412][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:12.413][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:12.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:12.425][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:12.428][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:12.432][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/fee290bbc11906f18fd9eae3d71c81ab.content.
sched.DEBUG[2025-08-23 16:02:12.433][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:12.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:12.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:12.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:12.464][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2025-08-23 16:02:12.465][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:12.467][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:12.470][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml.
biodb.DEBUG[2025-08-23 16:02:12.471][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:12.472][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:12.473][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:12.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:12.484][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.485][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.492][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:12.493][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:12.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.496][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:12.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:12.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.500][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:12.501][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:12.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.504][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:12.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:12.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.507][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:12.508][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:12.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:12.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:12.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.515][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:12.516][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:12.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.518][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:12.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:12.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.523][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:12.524][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:12.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.526][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:12.527][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.529][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.530][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:12.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:12.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:12.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.537][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:12.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:12.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.542][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:12.543][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:12.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.544][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:12.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:12.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.549][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:12.550][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:12.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.552][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.553][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:12.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:12.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.557][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:12.558][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:12.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.560][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:12.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:12.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:12.601][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2025-08-23 16:02:12.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:12.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:12.628][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2025-08-23 16:02:12.629][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:12.630][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:12.634][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml.
biodb.DEBUG[2025-08-23 16:02:12.635][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:12.636][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:12.637][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:12.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:12.648][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.649][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.656][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:12.657][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:12.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.659][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:12.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:12.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.664][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:12.665][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:12.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:12.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:12.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.671][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:12.672][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:12.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.674][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:12.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:12.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.679][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:12.680][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:12.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:12.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:12.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.686][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:12.687][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:12.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.689][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.690][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:12.691][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.693][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.694][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:12.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.697][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:12.698][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:12.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.700][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:12.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:12.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.705][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:12.706][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:12.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:12.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:12.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.712][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:12.713][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:12.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.715][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:12.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:12.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.720][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:12.721][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:12.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:12.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:12.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:12.764][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2025-08-23 16:02:12.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:12.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:12.786][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2025-08-23 16:02:12.787][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:12.788][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:12.792][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml.
biodb.DEBUG[2025-08-23 16:02:12.793][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:12.794][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:12.795][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:12.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:12.807][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.808][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.815][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:12.816][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:12.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.818][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.819][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:12.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:12.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.823][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:12.824][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:12.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.825][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:12.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:12.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:12.831][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:12.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.833][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:12.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:12.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.838][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:12.839][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:12.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.841][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:12.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:12.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.845][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:12.846][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:12.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.848][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.849][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:12.850][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.853][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:12.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.857][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:12.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:12.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:12.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:12.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.864][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:12.865][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:12.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:12.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:12.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.872][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:12.877][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:12.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.879][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.881][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:12.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:12.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:12.886][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:12.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:12.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:12.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:12.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:12.928][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2025-08-23 16:02:12.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:12.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:12.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:12.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:12.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:12.969][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2025-08-23 16:02:12.970][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:12.971][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:12.976][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml.
biodb.DEBUG[2025-08-23 16:02:12.977][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:12.978][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:12.979][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:12.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:12.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:12.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:12.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:12.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:12.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:12.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:12.991][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.992][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:12.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:12.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:12.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:12.999][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:13.000][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:13.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.003][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:13.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:13.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.007][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:13.008][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:13.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:13.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:13.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.014][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:13.015][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:13.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:13.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:13.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.023][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.029][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.030][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.033][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.037][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:13.038][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.041][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:13.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.044][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.045][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.052][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:13.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:13.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.055][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:13.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:13.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.060][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:13.061][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:13.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.062][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:13.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:13.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.067][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:13.068][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:13.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.070][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:13.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:13.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:13.111][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2025-08-23 16:02:13.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:13.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:13.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:13.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:13.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:13.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:13.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:13.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:13.137][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2025-08-23 16:02:13.138][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:13.140][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:13.143][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml.
biodb.DEBUG[2025-08-23 16:02:13.144][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:13.146][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:13.147][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:13.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:13.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:13.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:13.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:13.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:13.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:13.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:13.158][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.166][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:13.166][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:13.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.169][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:13.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:13.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.173][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:13.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:13.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:13.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:13.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.180][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:13.181][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:13.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:13.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:13.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.189][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.190][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.195][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.196][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.198][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.199][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.203][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:13.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.205][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.206][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:13.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.210][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.211][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.213][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.218][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:13.219][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:13.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:13.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:13.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.225][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:13.226][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:13.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.229][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:13.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:13.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.233][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:13.234][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:13.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.235][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:13.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:13.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:13.277][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2025-08-23 16:02:13.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:13.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:13.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:13.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:13.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:13.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:13.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:13.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:13.299][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2025-08-23 16:02:13.299][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:13.301][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:13.304][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml.
biodb.DEBUG[2025-08-23 16:02:13.305][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:13.306][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:13.308][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:13.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:13.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:13.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:13.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:13.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:13.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:13.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:13.319][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.320][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.327][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:13.328][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:13.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.331][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:13.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:13.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.335][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:13.336][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:13.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:13.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:13.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.342][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:13.343][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:13.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:13.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:13.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.350][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.351][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.353][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.357][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.358][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.361][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:13.362][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.365][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:13.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.369][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.370][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.372][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.376][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:13.377][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:13.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:13.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:13.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.389][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:13.390][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:13.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.393][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:13.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:13.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.396][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:13.397][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:13.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:13.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:13.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:13.440][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2025-08-23 16:02:13.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:13.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:13.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:13.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:13.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:13.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:13.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:13.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:13.461][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2025-08-23 16:02:13.462][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:13.463][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:13.467][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml.
biodb.DEBUG[2025-08-23 16:02:13.468][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:13.469][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:13.470][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:13.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:13.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:13.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:13.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:13.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:13.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:13.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:13.482][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.483][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.485][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.490][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:13.491][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:13.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.493][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:13.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:13.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.497][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:13.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:13.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:13.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:13.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.505][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:13.506][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:13.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:13.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:13.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.513][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.520][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.521][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.524][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:13.525][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.527][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:13.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.531][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.532][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.534][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.539][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:13.540][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:13.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:13.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:13.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.547][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:13.547][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:13.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.549][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.550][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:13.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:13.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.554][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:13.555][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:13.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.557][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:13.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:13.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:13.598][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2025-08-23 16:02:13.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:13.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:13.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:13.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:13.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:13.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:13.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:13.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:13.620][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2025-08-23 16:02:13.621][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:13.622][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:13.626][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml.
biodb.DEBUG[2025-08-23 16:02:13.627][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:13.629][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:13.630][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:13.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:13.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:13.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:13.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:13.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:13.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:13.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:13.647][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.649][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.654][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:13.655][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:13.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.658][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:13.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:13.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.662][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:13.663][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:13.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.664][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:13.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:13.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:13.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:13.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:13.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:13.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.677][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.678][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.684][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.685][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.688][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:13.689][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.692][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:13.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.695][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.696][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.698][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.703][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:13.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:13.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.705][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:13.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:13.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.710][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:13.711][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:13.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.714][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:13.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:13.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.718][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:13.719][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:13.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.721][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.722][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:13.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:13.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:13.762][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2025-08-23 16:02:13.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:13.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:13.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:13.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:13.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:13.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:13.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:13.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:13.783][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2025-08-23 16:02:13.784][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:13.786][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:13.790][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml.
biodb.DEBUG[2025-08-23 16:02:13.791][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:13.792][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:13.793][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:13.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:13.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:13.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:13.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:13.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:13.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:13.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:13.804][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.812][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:13.813][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:13.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.816][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:13.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:13.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.820][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:13.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:13.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:13.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:13.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.827][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:13.828][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:13.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:13.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:13.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.835][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.836][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.838][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.842][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.843][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:13.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.846][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:13.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.850][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:13.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.854][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.855][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:13.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.861][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:13.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:13.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.864][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:13.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:13.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.869][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:13.870][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:13.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:13.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:13.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.877][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:13.877][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:13.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.879][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:13.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:13.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:13.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:13.925][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2025-08-23 16:02:13.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:13.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:13.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:13.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:13.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:13.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:13.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:13.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:13.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:13.946][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2025-08-23 16:02:13.947][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:13.948][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:13.952][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml.
biodb.DEBUG[2025-08-23 16:02:13.953][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:13.954][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:13.955][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:13.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:13.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:13.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:13.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:13.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:13.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:13.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:13.967][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.970][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:13.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:13.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.974][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:13.975][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:13.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.977][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.978][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:13.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:13.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.982][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:13.983][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:13.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.985][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:13.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:13.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.990][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:13.991][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:13.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.992][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:13.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:13.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:13.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:13.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:13.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.005][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:14.006][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:14.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.009][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:14.010][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.012][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:14.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.016][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.017][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.024][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:14.025][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:14.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:14.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:14.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.031][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:14.032][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:14.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.034][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.035][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:14.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:14.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.039][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:14.040][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:14.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:14.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:14.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.083][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2025-08-23 16:02:14.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:14.105][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2025-08-23 16:02:14.106][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:14.107][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:14.110][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml.
biodb.DEBUG[2025-08-23 16:02:14.111][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:14.112][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:14.113][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:14.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:14.125][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.126][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.133][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:14.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:14.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.137][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:14.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:14.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.140][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:14.141][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:14.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.148][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.149][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:14.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:14.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.153][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:14.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:14.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:14.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:14.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:14.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:14.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.172][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:14.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.174][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.176][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:14.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.179][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.180][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.187][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:14.188][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:14.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.189][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:14.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:14.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.194][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:14.195][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:14.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.197][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.198][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:14.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:14.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.202][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:14.203][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:14.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:14.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:14.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.246][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2025-08-23 16:02:14.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:14.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:14.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:14.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:14.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:14.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:14.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:14.389][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2025-08-23 16:02:14.390][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:14.391][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:14.399][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml.
biodb.DEBUG[2025-08-23 16:02:14.400][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:14.402][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:14.403][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:14.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:14.414][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.415][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.417][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.422][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:14.423][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:14.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.426][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:14.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:14.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.429][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:14.430][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:14.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:14.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:14.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.437][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:14.438][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:14.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.440][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:14.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:14.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.445][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.452][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:14.453][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:14.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.456][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:14.457][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.458][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.460][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:14.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.463][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.464][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.471][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:14.472][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:14.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.474][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:14.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:14.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.479][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:14.480][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:14.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.481][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.482][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:14.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:14.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.486][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:14.487][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:14.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:14.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:14.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.531][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2025-08-23 16:02:14.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:14.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:14.572][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2025-08-23 16:02:14.573][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:14.574][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:14.578][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml.
biodb.DEBUG[2025-08-23 16:02:14.579][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:14.580][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:14.581][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:14.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:14.593][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.594][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.595][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.600][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:14.601][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:14.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.603][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.604][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:14.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:14.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.608][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:14.609][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:14.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.611][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:14.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:14.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.616][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:14.617][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:14.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.618][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:14.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:14.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.623][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.626][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.631][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:14.632][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:14.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.634][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:14.635][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.638][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:14.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.654][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:14.655][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:14.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:14.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:14.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.662][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:14.663][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:14.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:14.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:14.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.670][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:14.671][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:14.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:14.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:14.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.713][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2025-08-23 16:02:14.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:14.734][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2025-08-23 16:02:14.735][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:14.737][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:14.740][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml.
biodb.DEBUG[2025-08-23 16:02:14.741][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:14.742][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:14.743][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:14.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:14.755][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.762][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:14.763][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:14.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.766][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:14.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:14.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.770][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:14.771][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:14.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.773][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:14.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:14.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.778][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:14.779][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:14.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.781][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:14.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:14.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.786][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.793][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:14.794][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:14.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.797][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:14.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.801][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:14.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.805][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.812][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:14.813][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:14.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:14.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:14.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.820][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:14.821][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:14.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.823][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.824][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:14.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:14.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.827][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:14.828][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:14.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.831][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:14.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:14.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.872][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2025-08-23 16:02:14.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:14.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:14.893][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2025-08-23 16:02:14.894][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:14.895][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:14.904][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml.
biodb.DEBUG[2025-08-23 16:02:14.905][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:14.906][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:14.907][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:14.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:14.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:14.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:14.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:14.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:14.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:14.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:14.918][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:14.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:14.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.926][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:14.927][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:14.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.928][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.930][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:14.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:14.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.933][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:14.934][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:14.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.936][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:14.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:14.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.941][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:14.942][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:14.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:14.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:14.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.948][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.949][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.951][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:14.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.956][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:14.957][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:14.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.958][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.960][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:14.960][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.963][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:14.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:14.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.967][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.968][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.970][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:14.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.974][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:14.975][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:14.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.977][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:14.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:14.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.982][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:14.983][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:14.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.985][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.986][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:14.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:14.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.990][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:14.990][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:14.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.992][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:14.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:14.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:14.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:14.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:14.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:15.034][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2025-08-23 16:02:15.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:15.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:15.055][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2025-08-23 16:02:15.056][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:15.057][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:15.061][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml.
biodb.DEBUG[2025-08-23 16:02:15.062][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:15.063][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:15.064][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:15.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:15.076][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.078][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.083][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:15.084][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:15.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.087][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:15.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:15.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.091][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:15.092][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:15.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.095][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:15.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:15.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.099][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:15.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:15.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:15.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:15.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.106][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:15.107][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:15.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:15.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:15.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.114][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:15.115][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:15.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.117][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.118][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:15.119][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.121][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:15.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.125][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:15.126][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:15.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:15.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:15.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.133][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:15.134][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:15.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.137][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:15.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:15.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.141][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:15.142][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:15.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.144][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:15.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:15.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.148][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:15.158][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:15.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.161][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:15.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:15.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:15.201][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2025-08-23 16:02:15.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:15.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:15.222][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2025-08-23 16:02:15.223][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:15.225][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:15.228][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml.
biodb.DEBUG[2025-08-23 16:02:15.229][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:15.230][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:15.231][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:15.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:15.243][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.245][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.250][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:15.251][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:15.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.254][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:15.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:15.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.258][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:15.259][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:15.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.262][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:15.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:15.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.266][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:15.267][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:15.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.268][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:15.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:15.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.273][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:15.274][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:15.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.276][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:15.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:15.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.281][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:15.282][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:15.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.285][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:15.286][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.287][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.289][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:15.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.292][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:15.293][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:15.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.295][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:15.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:15.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.300][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:15.301][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:15.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:15.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:15.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.308][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:15.309][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:15.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.311][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:15.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:15.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.315][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:15.316][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:15.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.319][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:15.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:15.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:15.360][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2025-08-23 16:02:15.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:15.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:15.381][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2025-08-23 16:02:15.382][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:15.383][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:15.387][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml.
biodb.DEBUG[2025-08-23 16:02:15.388][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:15.389][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:15.390][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:15.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:15.402][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.404][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.414][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:15.415][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:15.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.417][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.418][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:15.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:15.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.422][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:15.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:15.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:15.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:15.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.430][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:15.431][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:15.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:15.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:15.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.437][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:15.438][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:15.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.440][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:15.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:15.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.445][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:15.446][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:15.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.448][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:15.449][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.451][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.452][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:15.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.456][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:15.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:15.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:15.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:15.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.463][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:15.464][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:15.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:15.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:15.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.471][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:15.472][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:15.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.474][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.475][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:15.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:15.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.478][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:15.479][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:15.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.481][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:15.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:15.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:15.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:15.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:15.523][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2025-08-23 16:02:15.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:15.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:15.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:15.555][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:15.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:15.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.575][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:15.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:15.576][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:15.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.581][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.585][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.586][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.591][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:15.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.603][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-23 16:02:15.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:15.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.622][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:15.623][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:15.624][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:15.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.628][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.633][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.634][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.636][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.638][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:15.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-23 16:02:15.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:15.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.674][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:15.675][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:15.676][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:15.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.684][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.686][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.691][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:15.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.703][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-23 16:02:15.704][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:15.704][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:15.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:15.731][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:15.734][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:15.740][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/b616afd034ed5d04cbb32f1e92c778e7.content.
sched.DEBUG[2025-08-23 16:02:15.741][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:15.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:15.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:15.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:15.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:15.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:15.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:15.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:15.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:15.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:15.826][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:15.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:15.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.845][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.846][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:15.847][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:15.847][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:15.848][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.858][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.861][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.862][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:15.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.874][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-23 16:02:15.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:15.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.893][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:15.894][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:15.895][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:15.895][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.899][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.905][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.906][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.908][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.909][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:15.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.927][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-08-23 16:02:15.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:15.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.945][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.945][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:15.946][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:15.947][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:15.948][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.949][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.950][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.953][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.955][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.956][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.957][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:15.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.960][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.961][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:15.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:15.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:15.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:15.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-08-23 16:02:15.974][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:15.975][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:15.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:15.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:15.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:15.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:15.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:15.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:15.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:15.988][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:15.990][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:15.995][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/4da83335ec00090f05f0a5128074d1f6.content.
sched.DEBUG[2025-08-23 16:02:15.996][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:15.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.140][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:16.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.159][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:16.160][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:16.161][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:16.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.163][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.174][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.175][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.176][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.181][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:16.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.193][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-08-23 16:02:16.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.210][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.211][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:16.212][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:16.213][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:16.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.217][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.222][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.223][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.226][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.227][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:16.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.239][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-08-23 16:02:16.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.258][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:16.258][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:16.259][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:16.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.264][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.267][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.269][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.273][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.274][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:16.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-08-23 16:02:16.287][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:16.288][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:16.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:16.300][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:16.303][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:16.305][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d4eeadefe2fd6c7a45a5c47263c29105.content.
sched.DEBUG[2025-08-23 16:02:16.306][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:16.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:16.349][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:16.351][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:16.353][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8a1fe476d9f07138803c04b6da6259b3.content.
sched.DEBUG[2025-08-23 16:02:16.354][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:16.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.418][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:16.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.442][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:16.443][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:16.444][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:16.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.453][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.454][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.456][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.458][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:16.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.470][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-08-23 16:02:16.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.487][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.488][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:16.489][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:16.490][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:16.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.493][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.498][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.499][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.500][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.503][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.504][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:16.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.516][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-08-23 16:02:16.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.535][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:16.536][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:16.537][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:16.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.541][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.545][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.547][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.550][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.551][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:16.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.564][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-08-23 16:02:16.565][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:16.566][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:16.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:16.594][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:16.596][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:16.598][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-23 16:02:16.599][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:16.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:16.622][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:16.625][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:16.626][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-23 16:02:16.627][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:16.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.670][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:16.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.693][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.694][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:16.695][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:16.696][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:16.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.700][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.701][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.702][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.706][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.710][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:16.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.722][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-23 16:02:16.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.739][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.740][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:16.741][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:16.742][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:16.743][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.746][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.750][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.752][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.755][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.756][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:16.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.769][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-23 16:02:16.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.787][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:16.788][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:16.789][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:16.790][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.792][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.797][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.798][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.799][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.804][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:16.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.816][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-23 16:02:16.817][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:16.818][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:16.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:16.831][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:16.833][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:16.835][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-23 16:02:16.836][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:16.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:16.880][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:16.883][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:16.886][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-23 16:02:16.887][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:16.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:16.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:16.957][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:16.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:16.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:16.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:16.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:16.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:16.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:16.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:16.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.975][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.976][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:16.977][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:16.977][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:16.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.986][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.987][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:16.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.991][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.992][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:16.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:16.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:16.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:16.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.004][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-23 16:02:17.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.022][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:17.023][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:17.024][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:17.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.028][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.034][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.038][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:17.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-23 16:02:17.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.069][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:17.070][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:17.071][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:17.072][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.077][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.080][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.081][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.085][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.085][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:17.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.098][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-23 16:02:17.099][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:17.099][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:17.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:17.112][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:17.114][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:17.116][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-23 16:02:17.117][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:17.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:17.285][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:17.288][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:17.289][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-23 16:02:17.290][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:17.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.353][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:17.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.371][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.372][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:17.373][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:17.374][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:17.375][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.376][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.377][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.384][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.385][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.386][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.388][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.389][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:17.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.401][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-23 16:02:17.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.419][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:17.420][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:17.421][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:17.422][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.423][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.435][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.436][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.437][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.438][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.440][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.441][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:17.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-23 16:02:17.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.471][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:17.472][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:17.473][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:17.474][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.481][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.483][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.486][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.487][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:17.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.499][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-23 16:02:17.500][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:17.501][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:17.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:17.528][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:17.530][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:17.533][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/52d6fe8916b2b36c38f3e0a454a0ac24.content.
sched.DEBUG[2025-08-23 16:02:17.534][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:17.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.657][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:17.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.680][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.681][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:17.682][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:17.683][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:17.684][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.685][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.686][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.688][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.689][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.693][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.694][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.695][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.696][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.697][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:17.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.709][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-23 16:02:17.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.727][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.728][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:17.728][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:17.729][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:17.730][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.734][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.737][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.738][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.739][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.744][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:17.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.756][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-08-23 16:02:17.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.773][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.774][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:17.775][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:17.776][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:17.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.780][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.785][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.786][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.789][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.790][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:17.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.802][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-08-23 16:02:17.803][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:17.804][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:17.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:17.817][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:17.819][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:17.825][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a1f794ee7474001c459ff6d20307d75d.content.
sched.DEBUG[2025-08-23 16:02:17.826][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:17.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:17.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:17.891][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:17.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.909][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.910][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:17.910][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:17.911][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:17.912][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.921][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.931][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:17.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.944][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-23 16:02:17.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:17.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.961][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.962][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:17.963][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:17.963][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:17.964][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.971][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.973][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:17.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.977][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.978][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:17.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:17.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:17.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:17.990][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-23 16:02:17.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:17.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:17.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:17.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:17.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:17.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:17.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.007][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.008][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:18.009][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:18.010][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:18.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.012][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.019][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.020][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.023][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.024][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:18.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.037][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-23 16:02:18.037][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:18.038][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:18.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:18.051][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:18.053][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:18.058][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/fee290bbc11906f18fd9eae3d71c81ab.content.
sched.DEBUG[2025-08-23 16:02:18.059][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:18.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:18.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.632][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:18.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.650][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.651][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:18.652][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:18.653][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:18.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.656][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.663][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.673][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:18.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-23 16:02:18.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.702][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.703][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:18.704][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:18.705][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:18.706][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.714][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.715][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.718][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.719][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:18.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.731][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-23 16:02:18.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.749][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.749][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:18.750][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:18.751][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:18.752][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.761][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:18.762][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.765][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:18.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:18.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.778][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-23 16:02:18.779][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:18.779][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-23 16:02:18.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:18.851][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:18.853][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:18.860][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-08-23 16:02:18.861][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:18.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:18.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:18.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:18.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:18.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:18.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:18.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:18.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:18.981][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2025-08-23 16:02:18.982][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:18.984][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:18.989][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml.
biodb.DEBUG[2025-08-23 16:02:18.990][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:18.991][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:18.992][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:18.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:18.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:18.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:18.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:18.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:19.003][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.011][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:19.012][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:19.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.015][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:19.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:19.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.019][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:19.020][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:19.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.021][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:19.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:19.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.026][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:19.027][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:19.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.029][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:19.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:19.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.034][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.035][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.041][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.042][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.045][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.049][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:19.050][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:19.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.052][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.053][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:19.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:19.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.057][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.058][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.059][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.064][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:19.065][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:19.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.067][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:19.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:19.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.072][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:19.073][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:19.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.076][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:19.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:19.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.079][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:19.080][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:19.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.082][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:19.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:19.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:19.124][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2025-08-23 16:02:19.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:19.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:19.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:19.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:19.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:19.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:19.145][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2025-08-23 16:02:19.146][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:19.148][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:19.153][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml.
biodb.DEBUG[2025-08-23 16:02:19.154][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:19.155][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:19.156][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:19.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:19.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:19.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:19.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:19.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:19.168][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.181][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:19.182][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:19.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.184][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.185][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:19.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:19.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.189][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:19.190][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:19.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.191][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.193][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:19.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:19.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.196][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:19.197][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:19.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.199][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:19.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:19.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.207][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.211][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.212][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.214][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.215][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.219][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:19.220][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:19.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.222][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.223][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:19.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:19.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.226][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.234][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:19.235][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:19.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:19.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:19.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.241][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:19.242][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:19.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.245][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:19.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:19.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.249][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:19.250][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:19.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.252][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:19.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:19.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:19.293][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2025-08-23 16:02:19.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:19.306][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:19.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:19.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:19.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:19.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:19.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:19.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.325][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:19.326][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:19.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:19.328][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.336][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.337][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.338][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.341][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:19.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.353][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-23 16:02:19.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:19.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:19.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:19.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:19.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:19.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.371][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.372][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:19.373][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:19.374][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:19.375][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.376][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.376][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.378][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.379][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.384][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.385][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.386][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.387][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.388][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:19.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.400][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-23 16:02:19.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:19.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:19.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:19.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:19.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:19.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.423][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.424][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:19.425][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:19.426][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:19.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.435][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.436][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.436][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.438][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.440][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.441][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:19.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-08-23 16:02:19.454][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:19.455][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:19.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:19.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:19.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:19.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:19.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:19.467][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:19.469][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:19.477][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/c90d0c20ab1b82ab9da517c0299e1056.content.
sched.DEBUG[2025-08-23 16:02:19.478][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:19.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:19.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:19.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:19.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:19.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:19.492][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2025-08-23 16:02:19.493][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:19.495][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:19.499][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml.
biodb.DEBUG[2025-08-23 16:02:19.500][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:19.501][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:19.502][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:19.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:19.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:19.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:19.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:19.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:19.514][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.516][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.521][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:19.522][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:19.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.525][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:19.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:19.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.529][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:19.530][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:19.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.531][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:19.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:19.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.536][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:19.537][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:19.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:19.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:19.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.544][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.545][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.552][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.553][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.554][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.555][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.559][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:19.560][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:19.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.562][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.563][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:19.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:19.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.567][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.568][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.569][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.574][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:19.575][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:19.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.577][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:19.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:19.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.582][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:19.583][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:19.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.585][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.586][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:19.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:19.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.589][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:19.590][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:19.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.592][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:19.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:19.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:19.634][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2025-08-23 16:02:19.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:19.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:19.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:19.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:19.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:19.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:19.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:19.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:19.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:19.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:19.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:19.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:19.681][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2025-08-23 16:02:19.682][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:19.683][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:19.688][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml.
biodb.DEBUG[2025-08-23 16:02:19.689][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:19.690][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:19.691][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:19.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:19.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:19.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:19.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:19.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:19.703][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.704][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.706][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.711][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:19.712][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:19.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:19.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:19.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.718][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:19.719][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:19.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.721][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:19.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:19.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.726][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:19.727][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:19.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.728][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:19.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:19.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.733][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.734][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:19.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.741][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.742][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.744][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.745][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:19.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.748][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:19.749][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:19.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.752][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:19.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:19.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.756][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.763][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:19.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:19.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:19.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:19.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.771][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:19.772][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:19.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.774][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.775][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:19.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:19.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.779][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:19.780][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:19.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.781][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:19.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:19.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:19.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:19.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:19.823][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2025-08-23 16:02:19.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:19.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:19.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:19.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:19.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:19.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:19.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:19.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:19.856][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:19.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:19.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:19.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:19.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:19.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:19.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.874][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.875][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:19.876][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:19.877][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:19.877][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.881][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.885][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.886][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.887][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.890][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.891][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:19.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.903][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-08-23 16:02:19.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:19.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:19.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:19.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:19.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:19.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.922][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:19.923][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:19.929][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:19.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.939][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.940][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.943][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.944][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:19.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-23 16:02:19.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:19.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:19.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:19.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:19.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:19.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:19.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:19.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.975][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:19.975][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:19.976][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:19.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.985][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.986][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:19.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.991][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:19.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:19.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:19.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:19.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.003][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-23 16:02:20.003][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:20.004][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:20.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:20.017][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:20.019][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:20.022][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/633ffa8aab56d260ba52bc860645ac89.content.
sched.DEBUG[2025-08-23 16:02:20.023][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:20.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:20.034][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2025-08-23 16:02:20.035][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:20.036][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:20.041][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml.
biodb.DEBUG[2025-08-23 16:02:20.042][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:20.043][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:20.044][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:20.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:20.056][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.057][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.063][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:20.064][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:20.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.066][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.067][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:20.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:20.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.071][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:20.072][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:20.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:20.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:20.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.079][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:20.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:20.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:20.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:20.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.086][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.087][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.089][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:20.095][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:20.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.096][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.098][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:20.099][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:20.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.100][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.101][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:20.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:20.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.105][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.106][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.108][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.113][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:20.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:20.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:20.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:20.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.121][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:20.122][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:20.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.124][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.125][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:20.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.129][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:20.130][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:20.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:20.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:20.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:20.174][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2025-08-23 16:02:20.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:20.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:20.201][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2025-08-23 16:02:20.202][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:20.204][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:20.206][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml.
biodb.DEBUG[2025-08-23 16:02:20.207][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:20.208][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:20.209][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:20.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:20.221][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.222][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.224][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.228][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:20.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:20.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.232][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:20.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:20.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.236][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:20.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:20.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.240][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:20.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:20.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.244][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:20.244][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:20.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.246][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:20.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:20.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.251][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.254][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.258][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:20.259][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:20.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.262][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:20.263][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:20.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.265][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.266][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:20.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:20.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.271][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.272][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.277][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:20.278][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:20.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:20.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:20.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.285][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:20.286][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:20.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.288][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.289][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:20.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:20.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.292][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:20.293][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:20.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.295][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:20.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:20.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:20.337][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2025-08-23 16:02:20.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:20.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:20.358][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2025-08-23 16:02:20.359][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:20.361][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:20.364][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml.
biodb.DEBUG[2025-08-23 16:02:20.365][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:20.366][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:20.367][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:20.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:20.379][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.380][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.387][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:20.388][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:20.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.391][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:20.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.394][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:20.395][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:20.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:20.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:20.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.402][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:20.403][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:20.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.405][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:20.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:20.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.410][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.417][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:20.418][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:20.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.421][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:20.422][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:20.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.424][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.425][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:20.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:20.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.445][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.446][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.453][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:20.454][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:20.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:20.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:20.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.461][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:20.462][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:20.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.464][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:20.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:20.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.468][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:20.469][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:20.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.471][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:20.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:20.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:20.512][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2025-08-23 16:02:20.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:20.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:20.533][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2025-08-23 16:02:20.534][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:20.536][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:20.540][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml.
biodb.DEBUG[2025-08-23 16:02:20.541][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:20.542][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:20.543][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:20.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:20.555][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.556][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.563][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:20.564][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:20.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.567][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:20.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:20.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.571][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:20.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:20.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.574][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:20.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:20.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.579][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:20.580][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:20.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.581][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:20.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:20.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:20.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.594][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:20.595][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:20.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.597][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.598][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:20.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:20.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.602][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:20.603][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:20.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.606][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:20.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:20.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.610][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.612][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.617][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:20.618][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:20.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.620][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:20.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:20.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.625][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:20.626][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:20.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.628][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:20.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:20.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.633][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:20.634][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:20.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:20.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:20.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:20.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:20.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:20.678][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2025-08-23 16:02:20.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:20.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:20.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:20.716][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:20.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:20.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.734][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.735][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:20.736][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:20.737][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:20.738][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.742][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.743][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.745][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.746][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.747][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.750][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.751][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:20.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.763][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-08-23 16:02:20.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:20.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.781][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:20.782][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:20.783][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:20.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.792][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.793][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.797][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.798][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:20.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.810][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-08-23 16:02:20.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:20.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.828][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.828][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:20.829][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:20.830][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:20.831][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.838][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.839][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.840][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.842][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.844][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.845][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:20.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.857][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-08-23 16:02:20.858][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:20.859][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:20.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:20.886][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:20.888][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:20.890][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-23 16:02:20.891][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-23 16:02:20.894][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:20.896][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:20.898][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-23 16:02:20.899][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:20.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:20.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:20.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:20.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:20.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:20.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:20.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:20.967][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:20.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:20.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:20.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:20.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:20.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:20.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:20.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:20.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.985][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.986][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:20.987][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:20.988][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:20.989][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.992][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:20.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:20.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:20.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.998][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:20.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.002][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:21.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.014][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-23 16:02:21.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.033][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:21.033][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:21.034][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:21.035][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.039][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.040][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.041][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.043][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.044][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.049][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:21.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.061][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-23 16:02:21.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.079][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.080][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:21.081][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:21.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:21.082][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.087][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.088][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.091][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.095][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.096][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:21.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.108][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-23 16:02:21.109][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:21.110][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:21.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:21.122][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:21.125][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:21.127][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-23 16:02:21.128][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:21.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:21.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:21.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:21.196][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:21.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.215][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:21.216][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:21.217][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:21.218][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.225][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.226][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.227][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.228][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.230][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.231][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:21.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.243][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-23 16:02:21.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.261][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.262][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:21.262][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:21.263][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:21.264][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.268][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.271][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.273][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.277][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.278][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:21.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.290][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-23 16:02:21.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.308][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.309][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:21.310][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:21.310][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:21.311][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.319][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.319][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.320][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.321][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.322][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.324][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.325][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:21.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.337][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-23 16:02:21.338][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:21.339][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:21.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:21.351][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:21.354][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:21.358][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-23 16:02:21.359][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:21.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:21.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:21.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:21.421][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:21.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.445][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:21.446][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:21.447][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:21.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.453][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.454][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.457][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.461][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.462][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:21.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.474][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-23 16:02:21.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.492][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:21.493][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:21.494][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:21.495][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.498][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.503][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.504][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.507][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.508][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:21.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.520][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-23 16:02:21.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.537][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.538][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:21.539][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:21.540][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:21.541][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.545][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.550][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:21.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.554][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.555][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:21.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.567][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-23 16:02:21.568][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:21.569][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:21.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:21.596][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:21.598][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:21.604][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/76cb051f1eabf309f608d38ca52ffd0b.content.
sched.DEBUG[2025-08-23 16:02:21.605][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:21.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:21.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:21.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:21.657][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2025-08-23 16:02:21.658][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:21.660][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:21.664][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml.
biodb.DEBUG[2025-08-23 16:02:21.665][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:21.667][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:21.668][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:21.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.680][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.681][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.688][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:21.689][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:21.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.691][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:21.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:21.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.695][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:21.701][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:21.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.705][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:21.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:21.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.709][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:21.710][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:21.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:21.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:21.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.716][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:21.717][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:21.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:21.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:21.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.724][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:21.725][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:21.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.726][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.728][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:21.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:21.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.731][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:21.732][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:21.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.734][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.735][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:21.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:21.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.739][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.740][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.746][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:21.747][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:21.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.749][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:21.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:21.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.754][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:21.755][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:21.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.758][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:21.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:21.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.761][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:21.762][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:21.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:21.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:21.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:21.805][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2025-08-23 16:02:21.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:21.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:21.827][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2025-08-23 16:02:21.828][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:21.829][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:21.834][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml.
biodb.DEBUG[2025-08-23 16:02:21.835][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:21.836][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:21.837][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:21.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:21.849][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.856][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:21.857][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:21.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.860][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:21.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:21.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.864][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:21.865][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:21.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:21.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:21.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.872][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:21.873][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:21.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.875][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:21.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:21.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.879][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:21.880][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:21.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.882][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:21.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:21.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.887][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:21.888][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:21.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.890][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.891][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:21.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:21.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.895][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:21.896][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:21.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.898][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:21.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:21.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.902][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.903][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.910][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:21.911][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:21.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:21.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:21.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.918][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:21.919][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:21.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.920][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.922][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:21.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:21.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.925][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:21.926][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:21.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.928][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:21.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:21.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:21.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:21.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:21.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:21.975][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2025-08-23 16:02:21.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:21.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:21.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:21.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:21.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:21.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:21.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:21.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:21.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:21.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:21.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:21.996][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2025-08-23 16:02:21.997][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:21.999][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:22.004][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml.
biodb.DEBUG[2025-08-23 16:02:22.005][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:22.006][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:22.007][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:22.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:22.019][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.021][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.026][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:22.027][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:22.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.029][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.030][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:22.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:22.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.034][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:22.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:22.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:22.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:22.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.041][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:22.042][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:22.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:22.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:22.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.049][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.050][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.052][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.057][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:22.058][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:22.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.059][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.060][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:22.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:22.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.064][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:22.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:22.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.067][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.068][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:22.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:22.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.072][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.079][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:22.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:22.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.082][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:22.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:22.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.087][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:22.088][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:22.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.091][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:22.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:22.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.095][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:22.096][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:22.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:22.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:22.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:22.140][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2025-08-23 16:02:22.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:22.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:22.162][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2025-08-23 16:02:22.163][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:22.164][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:22.169][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml.
biodb.DEBUG[2025-08-23 16:02:22.170][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:22.171][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:22.172][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:22.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:22.184][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.185][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.187][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.192][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:22.193][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:22.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:22.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:22.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.200][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:22.201][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:22.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.203][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:22.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:22.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.213][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:22.214][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:22.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.216][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:22.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:22.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.221][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.222][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.224][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.229][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:22.230][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:22.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.233][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:22.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:22.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.236][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:22.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:22.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.240][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:22.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:22.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.244][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.245][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.251][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:22.252][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:22.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.254][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:22.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:22.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.259][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:22.260][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:22.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:22.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:22.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.267][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:22.267][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:22.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.269][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:22.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:22.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:22.311][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2025-08-23 16:02:22.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:22.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:22.332][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2025-08-23 16:02:22.333][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:22.335][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:22.339][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml.
biodb.DEBUG[2025-08-23 16:02:22.340][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:22.341][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:22.342][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:22.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:22.355][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.356][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.357][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.362][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:22.363][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:22.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.366][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:22.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:22.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.370][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:22.371][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:22.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.373][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:22.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:22.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.378][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:22.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:22.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.381][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:22.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:22.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.386][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.387][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.388][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.393][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:22.394][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:22.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.396][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.397][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:22.398][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:22.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.401][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:22.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:22.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.408][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.413][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:22.414][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:22.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.417][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:22.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:22.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.420][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:22.421][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:22.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.424][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:22.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:22.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.428][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:22.429][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:22.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:22.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:22.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:22.479][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2025-08-23 16:02:22.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:22.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:22.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:22.511][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:22.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:22.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:22.530][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:22.531][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:22.532][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:22.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:22.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.537][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.541][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:22.542][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:22.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.547][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:22.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.559][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-23 16:02:22.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:22.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:22.578][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:22.579][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:22.580][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:22.580][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:22.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.589][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:22.590][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:22.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.594][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:22.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-23 16:02:22.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:22.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:22.625][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:22.626][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:22.627][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:22.628][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:22.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.636][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:22.637][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:22.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.639][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.641][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:22.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.654][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-23 16:02:22.655][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:22.655][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:22.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:22.668][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:22.670][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:22.678][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/3d37e3be2f5c6d64498effb7934e924b.content.
sched.DEBUG[2025-08-23 16:02:22.679][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:22.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:22.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:22.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:22.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:22.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:22.740][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2025-08-23 16:02:22.741][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:22.742][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:22.746][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml.
biodb.DEBUG[2025-08-23 16:02:22.747][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:22.748][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:22.749][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:22.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:22.761][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.768][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:22.769][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:22.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.772][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:22.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:22.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.776][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:22.777][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:22.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:22.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:22.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.783][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:22.784][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:22.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:22.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:22.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.791][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.792][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.798][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:22.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:22.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.802][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:22.803][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:22.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.805][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.806][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:22.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:22.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.810][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.811][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.812][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.817][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:22.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:22.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.820][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:22.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:22.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.825][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:22.826][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:22.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.829][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:22.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:22.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.833][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:22.834][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:22.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:22.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:22.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:22.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:22.877][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2025-08-23 16:02:22.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:22.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:22.899][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2025-08-23 16:02:22.900][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:22.901][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:22.905][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml.
biodb.DEBUG[2025-08-23 16:02:22.906][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:22.908][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:22.909][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:22.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:22.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:22.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:22.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:22.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:22.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:22.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:22.920][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.921][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:22.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:22.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.928][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:22.929][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:22.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.931][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.932][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:22.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:22.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.936][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:22.937][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:22.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:22.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:22.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.943][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:22.944][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:22.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.946][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:22.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:22.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.952][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.954][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:22.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.958][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:22.959][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:22.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.961][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.962][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:22.963][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:22.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.965][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.966][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:22.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:22.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.975][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:22.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.983][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:22.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:22.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:22.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:22.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.991][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:22.992][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:22.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.995][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:22.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:22.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:22.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:22.998][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:22.999][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:23.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:23.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:23.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:23.042][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2025-08-23 16:02:23.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:23.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:23.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:23.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:23.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:23.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:23.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:23.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:23.064][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2025-08-23 16:02:23.064][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:23.066][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:23.070][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml.
biodb.DEBUG[2025-08-23 16:02:23.071][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:23.073][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:23.074][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:23.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:23.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:23.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:23.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:23.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:23.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:23.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:23.086][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.087][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.088][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.093][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:23.094][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:23.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.096][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.097][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:23.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:23.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.101][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:23.102][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:23.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.104][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:23.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:23.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.109][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:23.110][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:23.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:23.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:23.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.116][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.117][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.124][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:23.125][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:23.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.127][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.128][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:23.129][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:23.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.132][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:23.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:23.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.136][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.137][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.144][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:23.145][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:23.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:23.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:23.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.151][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:23.153][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:23.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.155][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:23.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:23.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:23.160][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:23.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.162][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:23.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:23.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:23.204][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2025-08-23 16:02:23.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:23.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:23.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:23.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:23.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:23.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:23.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:23.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:23.231][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2025-08-23 16:02:23.232][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:23.233][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:23.238][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml.
biodb.DEBUG[2025-08-23 16:02:23.239][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:23.240][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:23.241][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:23.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:23.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:23.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:23.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:23.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:23.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:23.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:23.253][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.255][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.260][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:23.261][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:23.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.263][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.264][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:23.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:23.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.268][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:23.269][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:23.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.271][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:23.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:23.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.275][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:23.276][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:23.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:23.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:23.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.283][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.283][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.290][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:23.291][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:23.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.294][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:23.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:23.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.298][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:23.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:23.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.301][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.304][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.309][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:23.310][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:23.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.312][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:23.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:23.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.316][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:23.317][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:23.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.319][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.320][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:23.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:23.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.324][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:23.325][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:23.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.327][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.328][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:23.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:23.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:23.369][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2025-08-23 16:02:23.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:23.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:23.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:23.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:23.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:23.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:23.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:23.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:23.391][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2025-08-23 16:02:23.392][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:23.393][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:23.397][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml.
biodb.DEBUG[2025-08-23 16:02:23.398][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:23.399][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:23.400][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:23.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:23.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:23.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:23.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:23.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:23.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:23.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:23.412][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.413][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.420][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:23.421][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:23.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.424][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:23.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:23.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.428][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:23.429][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:23.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.430][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:23.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:23.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.435][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:23.436][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:23.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:23.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:23.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.443][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.444][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.450][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:23.451][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:23.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.453][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.454][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:23.455][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:23.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.458][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:23.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:23.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.469][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:23.470][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:23.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.472][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.479][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:23.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:23.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.483][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:23.484][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:23.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.486][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.487][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:23.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:23.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.491][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:23.492][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:23.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:23.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:23.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:23.535][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2025-08-23 16:02:23.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:23.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:23.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:23.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:23.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:23.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:23.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:23.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:23.556][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2025-08-23 16:02:23.557][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:23.558][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:23.562][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml.
biodb.DEBUG[2025-08-23 16:02:23.563][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:23.564][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:23.565][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:23.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:23.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:23.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:23.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:23.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:23.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:23.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:23.577][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.578][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.580][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.585][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:23.586][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:23.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.589][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:23.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:23.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.593][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:23.594][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:23.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.595][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:23.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:23.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.600][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:23.601][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:23.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.603][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:23.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:23.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.608][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.609][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.611][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.616][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:23.617][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:23.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.619][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.620][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:23.621][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:23.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.622][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.624][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:23.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:23.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.627][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.628][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.635][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:23.636][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:23.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.638][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:23.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:23.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.643][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:23.644][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:23.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.646][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.647][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:23.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:23.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.650][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:23.651][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:23.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:23.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:23.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:23.695][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2025-08-23 16:02:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:23.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:23.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:23.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:23.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:23.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:23.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:23.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:23.717][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2025-08-23 16:02:23.718][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:23.719][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:23.723][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml.
biodb.DEBUG[2025-08-23 16:02:23.724][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:23.725][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:23.726][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:23.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:23.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:23.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:23.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:23.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:23.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:23.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:23.744][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.747][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.752][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:23.753][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:23.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.754][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.755][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:23.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:23.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.759][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:23.760][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:23.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.762][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:23.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:23.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.767][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:23.768][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:23.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.769][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:23.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:23.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.782][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:23.783][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:23.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.786][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:23.787][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:23.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.789][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:23.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:23.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.793][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.801][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:23.802][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:23.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:23.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:23.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.808][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:23.809][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:23.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.811][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.812][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:23.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:23.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.816][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:23.817][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:23.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:23.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:23.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:23.861][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2025-08-23 16:02:23.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:23.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:23.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:23.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:23.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:23.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:23.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:23.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:23.883][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2025-08-23 16:02:23.884][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:23.885][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:23.889][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml.
biodb.DEBUG[2025-08-23 16:02:23.890][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:23.891][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:23.892][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:23.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:23.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:23.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:23.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:23.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:23.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:23.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:23.905][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:23.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.912][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:23.913][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:23.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.915][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.916][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:23.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:23.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.920][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:23.921][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:23.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:23.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:23.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.928][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:23.929][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:23.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.931][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:23.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:23.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.936][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.937][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:23.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.943][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:23.944][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:23.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.946][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.947][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:23.948][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:23.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.950][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.951][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:23.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:23.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.955][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.956][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.957][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:23.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.962][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:23.963][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:23.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.965][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:23.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:23.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.970][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:23.971][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:23.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.974][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:23.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:23.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.977][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:23.978][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:23.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:23.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:23.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:23.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:23.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:23.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:23.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:24.027][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2025-08-23 16:02:24.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:24.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:24.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:24.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:24.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:24.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:24.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:24.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:24.048][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2025-08-23 16:02:24.049][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:24.050][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:24.054][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml.
biodb.DEBUG[2025-08-23 16:02:24.055][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:24.056][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:24.057][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:24.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:24.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:24.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:24.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:24.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:24.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:24.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:24.069][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.071][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.076][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:24.077][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:24.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.080][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:24.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:24.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.084][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:24.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:24.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.088][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:24.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:24.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.091][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:24.092][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:24.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.095][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.099][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:24.100][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:24.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.102][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.103][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:24.104][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:24.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.107][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:24.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:24.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.111][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.112][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.118][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:24.119][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:24.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:24.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:24.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.126][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:24.127][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:24.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.129][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.130][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:24.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:24.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.134][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:24.134][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:24.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.136][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:24.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:24.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:24.178][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2025-08-23 16:02:24.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:24.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:24.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:24.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:24.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:24.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:24.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:24.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:24.199][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2025-08-23 16:02:24.200][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:24.202][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:24.205][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml.
biodb.DEBUG[2025-08-23 16:02:24.206][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:24.207][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:24.208][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:24.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:24.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:24.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:24.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:24.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:24.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:24.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:24.220][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.221][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.223][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.228][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:24.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:24.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.237][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:24.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:24.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.241][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:24.242][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:24.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:24.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:24.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.249][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:24.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:24.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.252][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.253][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.254][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.257][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:24.258][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:24.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.261][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:24.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:24.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.263][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.264][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:24.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:24.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.271][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.275][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:24.276][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:24.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:24.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:24.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.283][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:24.284][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:24.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.287][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:24.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:24.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.290][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:24.291][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:24.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:24.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:24.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:24.334][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2025-08-23 16:02:24.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:24.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:24.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:24.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:24.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:24.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:24.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:24.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:24.356][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2025-08-23 16:02:24.357][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:24.358][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:24.362][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml.
biodb.DEBUG[2025-08-23 16:02:24.363][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:24.364][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:24.365][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:24.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:24.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:24.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:24.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:24.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:24.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:24.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:24.377][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.378][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.380][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.385][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:24.386][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:24.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.388][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.389][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:24.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:24.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.393][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:24.394][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:24.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.395][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:24.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:24.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.400][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:24.401][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:24.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.403][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:24.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:24.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.408][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.409][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.410][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.415][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:24.416][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:24.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.418][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.419][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:24.420][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:24.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.422][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.423][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:24.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:24.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.427][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.428][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.434][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:24.435][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:24.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:24.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:24.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.442][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:24.443][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:24.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.445][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.446][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:24.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:24.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.450][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:24.451][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:24.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.453][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:24.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:24.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:24.500][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2025-08-23 16:02:24.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:24.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:24.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:24.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:24.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:24.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:24.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:24.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:24.521][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2025-08-23 16:02:24.522][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:24.523][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:24.527][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml.
biodb.DEBUG[2025-08-23 16:02:24.528][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:24.530][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:24.531][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:24.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:24.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:24.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:24.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:24.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:24.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:24.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:24.542][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.543][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.545][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.550][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:24.551][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:24.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.552][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.553][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:24.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:24.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.557][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:24.558][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:24.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.560][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:24.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:24.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.565][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:24.566][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:24.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.567][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:24.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:24.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.572][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.573][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.575][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.580][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:24.581][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:24.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.582][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.583][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:24.584][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:24.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.586][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.587][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:24.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:24.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.591][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.592][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.594][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.599][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:24.600][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:24.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.601][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:24.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:24.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.606][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:24.607][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:24.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.609][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.610][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:24.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:24.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.614][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:24.615][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:24.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.617][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:24.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:24.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:24.659][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2025-08-23 16:02:24.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:24.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:24.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:24.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:24.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:24.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:24.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:24.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:24.680][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2025-08-23 16:02:24.681][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:24.682][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:24.686][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml.
biodb.DEBUG[2025-08-23 16:02:24.687][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:24.688][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:24.689][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:24.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:24.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:24.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:24.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:24.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:24.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:24.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:24.701][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.702][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.709][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:24.710][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:24.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:24.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:24.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.716][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:24.717][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:24.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:24.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:24.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.724][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:24.725][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:24.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:24.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:24.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.738][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.739][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.745][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:24.746][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:24.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.749][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:24.750][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:24.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.753][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:24.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:24.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.757][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.758][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.764][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:24.765][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:24.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.767][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:24.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:24.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.772][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:24.773][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:24.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.774][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.776][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:24.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:24.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.779][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:24.780][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:24.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:24.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:24.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:24.823][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2025-08-23 16:02:24.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:24.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:24.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:24.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:24.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:24.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:24.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:24.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:24.845][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2025-08-23 16:02:24.846][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:24.847][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:24.852][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml.
biodb.DEBUG[2025-08-23 16:02:24.853][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:24.854][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:24.856][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:24.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:24.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:24.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:24.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:24.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:24.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:24.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:24.868][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.869][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.870][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.875][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:24.876][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:24.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.878][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.879][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:24.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:24.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.883][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:24.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:24.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:24.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:24.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.891][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:24.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:24.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.894][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:24.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:24.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.898][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.899][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.901][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:24.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.906][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:24.907][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:24.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.910][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:24.911][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:24.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.914][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:24.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:24.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.918][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.926][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:24.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:24.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.928][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.930][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:24.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:24.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.933][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:24.934][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:24.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.936][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.937][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:24.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:24.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.941][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:24.942][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:24.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.945][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:24.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:24.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:24.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:24.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:24.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:24.992][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2025-08-23 16:02:24.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:24.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:24.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:24.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:25.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:25.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:25.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:25.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:25.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:25.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:25.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:25.014][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2025-08-23 16:02:25.014][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:25.016][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:25.020][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml.
biodb.DEBUG[2025-08-23 16:02:25.021][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:25.022][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:25.023][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:25.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:25.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:25.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:25.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:25.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:25.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:25.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:25.035][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.038][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.043][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:25.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:25.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.046][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.047][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:25.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:25.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.051][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:25.052][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:25.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:25.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:25.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.059][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:25.060][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:25.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:25.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:25.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.066][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.067][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.074][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:25.075][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:25.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.076][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.078][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:25.079][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:25.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.081][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:25.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:25.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.085][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.086][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.088][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.093][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:25.094][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:25.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.095][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:25.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:25.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.100][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:25.101][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:25.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.103][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.104][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:25.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:25.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.108][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:25.109][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:25.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.111][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:25.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:25.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:25.152][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2025-08-23 16:02:25.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:25.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:25.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:25.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:25.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:25.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:25.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:25.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:25.174][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2025-08-23 16:02:25.175][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:25.176][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:25.180][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml.
biodb.DEBUG[2025-08-23 16:02:25.181][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:25.182][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:25.183][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:25.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:25.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:25.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:25.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:25.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:25.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:25.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:25.195][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.198][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.203][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:25.204][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:25.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.206][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.207][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:25.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:25.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.211][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:25.212][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:25.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.213][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:25.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:25.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.218][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:25.219][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:25.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:25.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:25.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.226][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.227][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.238][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:25.240][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:25.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.242][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.243][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:25.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:25.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.246][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.247][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:25.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:25.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.251][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.252][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.258][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:25.259][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:25.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:25.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:25.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.266][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:25.267][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:25.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.268][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.269][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:25.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:25.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.273][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:25.274][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:25.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.276][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:25.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:25.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:25.317][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2025-08-23 16:02:25.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:25.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:25.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:25.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:25.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:25.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:25.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:25.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:25.338][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2025-08-23 16:02:25.339][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:25.341][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:25.345][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml.
biodb.DEBUG[2025-08-23 16:02:25.346][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:25.347][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:25.348][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:25.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:25.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:25.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:25.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:25.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:25.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:25.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:25.360][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.361][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.367][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:25.368][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:25.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.371][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:25.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:25.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.375][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:25.376][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:25.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.378][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:25.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:25.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.382][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:25.383][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:25.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.385][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:25.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:25.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.390][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.391][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.398][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:25.399][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:25.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.402][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:25.403][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:25.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.404][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.406][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:25.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:25.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.409][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.410][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.417][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:25.418][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:25.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.421][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:25.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:25.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.425][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:25.426][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:25.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.427][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.428][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:25.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:25.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.432][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:25.433][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:25.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.435][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:25.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:25.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:25.477][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2025-08-23 16:02:25.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:25.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:25.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:25.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:25.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:25.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:25.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:25.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:25.504][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2025-08-23 16:02:25.505][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:25.506][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:25.510][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml.
biodb.DEBUG[2025-08-23 16:02:25.511][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:25.512][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:25.513][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:25.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:25.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:25.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:25.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:25.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:25.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:25.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:25.525][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.533][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:25.533][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:25.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.536][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:25.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:25.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.540][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:25.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:25.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.543][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:25.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:25.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.548][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:25.548][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:25.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.550][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:25.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:25.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.555][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.556][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.562][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:25.563][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:25.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.566][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:25.567][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:25.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.569][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.570][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:25.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:25.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.574][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.575][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.576][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.581][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:25.582][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:25.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:25.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:25.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.589][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:25.590][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:25.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.592][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.593][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:25.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:25.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.597][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:25.598][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:25.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:25.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:25.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:25.641][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2025-08-23 16:02:25.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:25.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:25.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:25.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:25.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:25.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:25.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:25.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:25.662][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2025-08-23 16:02:25.663][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:25.665][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:25.670][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml.
biodb.DEBUG[2025-08-23 16:02:25.671][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:25.672][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:25.673][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:25.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:25.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:25.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:25.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:25.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:25.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:25.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:25.685][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.686][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.688][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.693][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:25.694][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:25.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.695][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.697][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:25.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:25.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.700][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:25.701][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:25.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.703][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.704][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:25.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:25.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.708][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:25.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:25.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:25.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:25.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.716][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.716][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.718][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.723][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:25.724][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:25.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.726][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.727][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:25.728][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:25.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.730][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.731][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:25.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:25.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.745][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.753][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:25.754][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:25.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.755][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:25.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:25.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.761][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:25.762][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:25.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.764][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:25.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:25.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.768][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:25.769][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:25.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:25.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:25.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:25.812][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2025-08-23 16:02:25.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:25.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:25.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:25.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:25.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:25.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:25.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:25.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:25.833][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2025-08-23 16:02:25.834][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:25.835][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:25.839][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml.
biodb.DEBUG[2025-08-23 16:02:25.840][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:25.841][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:25.842][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:25.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:25.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:25.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:25.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:25.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:25.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:25.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:25.854][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.855][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.857][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.862][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:25.863][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:25.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.866][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:25.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:25.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.870][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:25.871][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:25.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:25.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:25.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.877][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:25.878][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:25.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:25.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:25.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.885][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.886][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:25.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.893][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:25.894][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:25.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.895][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.896][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:25.897][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:25.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.899][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.900][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:25.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:25.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.904][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.905][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.912][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:25.913][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:25.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.915][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:25.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:25.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.919][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:25.920][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:25.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.922][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.923][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:25.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:25.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.927][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:25.928][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:25.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:25.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:25.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:25.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:25.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:25.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:25.972][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2025-08-23 16:02:25.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:25.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:25.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:25.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:25.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:25.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:25.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:25.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:25.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:25.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:25.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:25.999][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2025-08-23 16:02:26.000][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:26.002][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:26.005][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml.
biodb.DEBUG[2025-08-23 16:02:26.006][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:26.007][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:26.008][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:26.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:26.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:26.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:26.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:26.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:26.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:26.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:26.020][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.023][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.027][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:26.028][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:26.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.030][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.031][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:26.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:26.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.035][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:26.036][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:26.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.038][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:26.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:26.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.043][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:26.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:26.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.045][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:26.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:26.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.050][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.053][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.058][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:26.059][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:26.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.060][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.061][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:26.062][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:26.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.064][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.065][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:26.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:26.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.069][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.070][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.077][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:26.078][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:26.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:26.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:26.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.084][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:26.085][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:26.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.088][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:26.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:26.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.092][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:26.093][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:26.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:26.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:26.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:26.136][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2025-08-23 16:02:26.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:26.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:26.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:26.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:26.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:26.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:26.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:26.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:26.158][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2025-08-23 16:02:26.159][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:26.160][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:26.164][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml.
biodb.DEBUG[2025-08-23 16:02:26.165][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:26.166][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:26.167][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:26.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:26.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:26.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:26.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:26.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:26.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:26.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:26.179][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.180][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.187][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:26.188][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:26.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.189][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.191][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:26.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:26.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.194][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:26.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:26.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.197][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:26.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:26.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:26.203][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:26.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.205][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:26.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:26.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.210][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.210][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.217][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:26.218][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:26.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.221][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:26.222][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:26.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.224][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.225][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:26.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:26.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.229][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.230][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.236][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:26.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:26.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:26.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:26.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.250][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:26.251][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:26.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:26.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:26.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.258][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:26.259][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:26.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:26.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:26.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:26.302][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2025-08-23 16:02:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:26.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:26.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:26.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:26.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:26.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:26.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:26.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:26.324][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2025-08-23 16:02:26.324][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:26.326][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:26.329][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml.
biodb.DEBUG[2025-08-23 16:02:26.330][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:26.332][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:26.333][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:26.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:26.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:26.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:26.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:26.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:26.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:26.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:26.344][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.345][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.347][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.352][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:26.353][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:26.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:26.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:26.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.360][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:26.361][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:26.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.364][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:26.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:26.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.367][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:26.368][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:26.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:26.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:26.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.375][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.376][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.378][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.383][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:26.384][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:26.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.385][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.387][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:26.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:26.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.390][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:26.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:26.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.394][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.395][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.402][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:26.403][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:26.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.404][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:26.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:26.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.409][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:26.410][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:26.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.413][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:26.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:26.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.417][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:26.418][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:26.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:26.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:26.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:26.462][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2025-08-23 16:02:26.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:26.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:26.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:26.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:26.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:26.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:26.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:26.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:26.483][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2025-08-23 16:02:26.484][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:26.485][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:26.489][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml.
biodb.DEBUG[2025-08-23 16:02:26.490][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:26.491][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:26.497][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:26.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:26.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:26.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:26.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:26.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:26.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:26.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:26.510][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.511][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.527][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:26.528][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:26.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.530][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.532][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:26.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:26.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.536][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:26.537][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:26.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:26.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:26.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.545][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:26.546][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:26.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:26.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:26.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.554][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.555][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.557][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.562][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:26.563][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:26.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.567][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:26.568][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:26.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.570][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.571][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:26.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:26.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.575][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.576][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.584][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:26.585][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:26.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.587][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:26.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:26.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.593][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:26.594][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:26.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.596][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:26.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:26.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.602][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:26.603][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:26.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.606][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:26.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:26.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:26.653][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2025-08-23 16:02:26.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:26.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:26.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:26.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:26.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:26.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:26.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:26.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:26.678][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2025-08-23 16:02:26.679][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:26.681][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:26.684][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml.
biodb.DEBUG[2025-08-23 16:02:26.685][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:26.687][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:26.688][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:26.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:26.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:26.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:26.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:26.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:26.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:26.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:26.702][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.704][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.705][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.711][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:26.712][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:26.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.714][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.715][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:26.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:26.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.719][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:26.720][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:26.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.722][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:26.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:26.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.728][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:26.729][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:26.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:26.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:26.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.736][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.737][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.739][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.744][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:26.745][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:26.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.747][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.749][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:26.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:26.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.753][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:26.754][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:26.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.757][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:26.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:26.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.761][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.762][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.770][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:26.771][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:26.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.773][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:26.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:26.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.778][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:26.779][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:26.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.781][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.782][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:26.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:26.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.798][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:26.799][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:26.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:26.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:26.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:26.843][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2025-08-23 16:02:26.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:26.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:26.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:26.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:26.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:26.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:26.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:26.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-23 16:02:26.864][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2025-08-23 16:02:26.865][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-23 16:02:26.866][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-23 16:02:26.870][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml.
biodb.DEBUG[2025-08-23 16:02:26.871][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-23 16:02:26.872][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-23 16:02:26.873][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-23 16:02:26.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:26.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:26.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:26.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:26.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:26.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:26.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:26.885][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.886][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.893][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:26.894][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:26.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.895][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:26.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:26.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.900][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:26.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:26.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:26.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:26.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.908][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:26.909][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:26.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.911][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:26.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:26.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.916][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.917][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:26.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.924][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:26.924][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:26.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.926][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.927][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:26.928][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:26.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.931][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-23 16:02:26.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:26.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:26.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.943][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:26.944][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:26.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:26.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:26.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.950][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:26.951][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:26.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.954][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-23 16:02:26.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:26.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.958][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:26.959][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:26.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.961][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:26.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:26.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:26.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:26.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:26.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:26.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:27.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:27.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.003][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2025-08-23 16:02:27.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.062][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:27.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.080][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.081][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:27.082][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:27.083][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:27.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.091][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.093][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.096][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.097][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:27.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.110][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-23 16:02:27.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.128][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:27.129][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:27.130][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:27.131][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.140][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.141][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.144][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.145][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:27.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.158][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-23 16:02:27.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.175][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.176][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:27.177][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:27.178][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:27.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.180][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.181][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.184][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.186][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.188][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.192][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.193][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:27.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.205][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-23 16:02:27.206][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:27.207][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:27.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:27.220][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:27.222][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:27.228][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-08-23 16:02:27.229][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:27.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.322][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:27.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.341][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:27.342][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:27.342][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:27.343][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.347][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.350][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.352][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.357][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:27.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.369][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-23 16:02:27.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.386][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.387][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:27.388][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:27.389][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:27.389][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.399][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.399][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.402][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.403][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:27.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-23 16:02:27.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.433][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.434][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:27.435][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:27.436][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:27.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.439][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.440][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.441][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.442][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.444][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.446][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.450][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:27.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.463][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-23 16:02:27.464][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:27.464][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:27.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:27.492][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:27.494][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:27.500][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-08-23 16:02:27.501][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:27.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.656][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:27.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.675][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:27.676][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:27.676][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:27.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.686][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.687][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.691][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:27.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.703][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-23 16:02:27.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.722][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:27.723][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:27.724][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:27.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.728][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.733][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.734][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.738][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:27.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.751][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-23 16:02:27.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.770][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:27.770][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:27.771][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:27.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.776][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.777][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.780][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.781][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.790][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.791][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:27.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.804][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-08-23 16:02:27.805][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:27.806][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:27.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:27.819][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:27.821][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:27.827][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/c90d0c20ab1b82ab9da517c0299e1056.content.
sched.DEBUG[2025-08-23 16:02:27.829][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:27.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:27.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:27.915][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:27.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.934][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:27.934][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:27.935][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:27.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.940][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.943][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.944][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.945][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.950][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:27.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.962][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-08-23 16:02:27.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:27.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:27.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:27.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:27.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:27.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:27.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:27.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.980][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.981][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:27.981][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:27.982][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:27.983][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.991][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.992][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:27.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:27.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:27.997][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:27.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:27.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.009][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-23 16:02:28.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.027][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.028][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:28.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:28.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:28.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.045][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.046][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.050][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.051][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:28.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.063][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-23 16:02:28.064][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:28.065][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:28.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:28.077][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:28.079][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:28.082][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/633ffa8aab56d260ba52bc860645ac89.content.
sched.DEBUG[2025-08-23 16:02:28.083][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:28.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:28.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:28.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:28.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:28.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:28.186][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:28.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.204][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.205][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:28.206][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:28.207][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:28.208][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.210][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.211][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.212][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.215][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.217][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.221][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:28.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.234][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-08-23 16:02:28.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.251][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.252][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:28.253][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:28.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:28.255][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.256][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.260][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.264][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.268][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.268][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:28.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.287][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-08-23 16:02:28.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.304][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.305][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:28.306][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:28.307][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:28.308][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.316][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.317][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.319][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.321][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:28.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.333][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-08-23 16:02:28.334][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:28.335][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:28.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:28.362][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:28.364][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:28.365][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-23 16:02:28.366][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-23 16:02:28.369][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:28.371][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:28.373][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-23 16:02:28.374][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:28.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:28.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:28.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:28.437][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:28.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.456][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:28.456][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:28.457][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:28.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.462][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.467][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.471][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.472][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:28.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.484][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-23 16:02:28.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.502][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.503][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:28.503][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:28.504][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:28.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.507][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.509][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.512][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.514][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.518][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.519][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:28.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.537][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-23 16:02:28.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.556][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:28.557][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:28.557][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:28.558][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.562][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.563][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.567][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.568][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.571][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.572][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:28.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.584][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-23 16:02:28.585][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:28.585][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:28.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:28.598][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:28.600][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:28.603][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-23 16:02:28.604][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:28.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:28.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:28.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:28.667][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:28.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.685][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:28.686][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:28.687][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:28.688][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.689][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.690][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.692][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.693][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.695][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.697][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.701][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.702][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:28.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.714][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-23 16:02:28.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.733][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:28.734][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:28.735][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:28.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.739][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.744][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.745][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.746][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.747][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.749][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:28.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.762][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-23 16:02:28.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.785][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.786][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:28.787][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:28.788][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:28.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.790][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.793][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.797][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.798][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.799][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.800][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.802][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.802][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:28.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.814][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-23 16:02:28.815][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:28.816][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:28.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:28.828][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:28.831][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:28.835][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-23 16:02:28.835][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:28.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:28.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:28.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:28.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:28.899][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:28.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.917][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.918][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:28.919][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:28.920][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:28.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.925][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.926][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.928][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.929][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.930][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.934][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:28.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.947][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-23 16:02:28.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:28.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:28.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:28.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:28.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:28.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.966][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:28.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:28.967][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:28.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.978][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:28.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.982][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:28.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:28.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:28.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:28.994][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-23 16:02:28.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:28.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:28.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.020][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:29.021][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:29.022][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:29.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.023][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.024][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.026][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.030][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.032][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.035][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.036][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:29.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-23 16:02:29.049][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:29.050][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:29.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:29.077][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:29.079][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:29.084][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/76cb051f1eabf309f608d38ca52ffd0b.content.
sched.DEBUG[2025-08-23 16:02:29.085][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:29.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.249][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:29.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.274][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:29.275][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:29.276][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:29.277][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.286][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.290][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:29.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.303][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-23 16:02:29.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.321][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:29.322][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:29.323][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:29.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.327][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.332][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.332][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.337][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:29.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.349][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-23 16:02:29.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.367][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.368][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:29.368][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:29.369][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:29.370][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.375][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.376][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.378][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.378][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.379][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:29.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.383][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.384][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:29.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:29.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.396][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-23 16:02:29.397][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:29.398][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:29.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:29.410][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:29.413][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:29.419][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/3d37e3be2f5c6d64498effb7934e924b.content.
sched.DEBUG[2025-08-23 16:02:29.421][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:29.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:29.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:29.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:29.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:29.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:29.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:29.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:29.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:29.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:29.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:29.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:29.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:30.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:30.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:30.044][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:30.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.062][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:30.063][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:30.064][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:30.065][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.066][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.073][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.074][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.078][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.078][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:30.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.091][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-23 16:02:30.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.109][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:30.110][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:30.111][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:30.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.115][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.121][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.125][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:30.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-23 16:02:30.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.156][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:30.157][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:30.158][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:30.159][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.168][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.173][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:30.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-23 16:02:30.186][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:30.187][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:30.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:30.199][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:30.201][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:30.207][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-08-23 16:02:30.209][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:30.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:30.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:30.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:30.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:30.300][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:30.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.319][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:30.320][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:30.321][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:30.322][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.322][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.323][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.331][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.334][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.335][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:30.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.348][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-23 16:02:30.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.365][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.366][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:30.367][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:30.368][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:30.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.370][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.373][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.376][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.378][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.379][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.383][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:30.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.395][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-23 16:02:30.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.413][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.414][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:30.415][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:30.416][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:30.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.424][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.425][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.426][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-23 16:02:30.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.430][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-23 16:02:30.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.443][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-23 16:02:30.443][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:30.444][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-23 16:02:30.459][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:30.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:30.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.463][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:30.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:30.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.472][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:30.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:30.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-23 16:02:30.479][biodb::testThat]
biodb.INFO [2025-08-23 16:02:30.480][biodb::testThat] Running test function test_annotateMzValues_additional_fields (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-08-23 16:02:30.481][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-23 16:02:30.482][biodb::testThat]
biodb.TRACE[2025-08-23 16:02:30.484][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:02:30.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:02:30.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.488][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:02:30.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:02:30.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.492][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-23 16:02:30.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-23 16:02:30.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:30.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:30.552][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:30.554][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:30.556][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-23 16:02:30.557][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:30.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:30.580][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:30.582][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:30.584][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-23 16:02:30.585][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:30.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:30.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:30.628][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:30.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:30.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:30.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:30.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:30.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:30.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:30.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:30.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:30.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:30.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:30.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:30.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.646][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:30.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:30.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.650][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:30.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:30.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:30.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:30.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.665][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:30.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:30.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:30.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:30.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:30.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:30.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.683][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:30.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:30.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:30.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:30.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.705][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:30.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:30.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.714][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:30.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:30.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:30.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:30.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:30.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:30.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:30.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:30.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:30.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:30.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.734][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:30.735][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:30.736][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:30.737][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:30.737][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:30.738][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:30.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:30.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.742][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:30.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:30.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.745][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.746][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.749][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:30.750][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:30.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.753][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:30.754][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:30.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.755][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.756][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.757][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.760][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:30.761][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:30.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.763][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.767][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.768][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.770][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.771][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:30.772][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:30.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.773][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.774][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:30.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:30.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.778][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:30.779][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:30.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.781][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.782][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:30.783][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:30.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.785][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:30.786][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:30.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.792][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:30.793][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:30.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.796][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:30.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:30.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.799][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.800][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.801][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.804][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:30.805][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:30.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.808][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.809][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.811][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.812][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.814][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.815][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:30.816][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:30.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.818][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.819][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:30.819][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:30.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.822][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:30.823][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:30.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.825][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.826][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:30.827][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:30.828][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:30.829][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:30.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.831][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:30.832][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:30.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.838][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.839][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:30.840][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:30.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.841][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.842][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:30.843][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:30.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.850][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.851][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.853][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.857][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:30.858][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:30.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.860][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:30.861][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:30.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.864][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:30.865][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:30.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.868][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:30.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:30.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:30.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:30.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:30.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:30.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.880][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:30.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:30.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.884][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:30.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:30.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.887][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:30.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:30.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:30.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:30.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:30.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.906][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:30.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:30.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:30.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:30.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:30.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:30.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:30.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:30.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:30.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:30.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:30.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:30.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:30.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:30.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:30.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.117][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.121][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.124][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.135][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.156][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-08-23 16:02:31.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:31.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:31.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:31.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:31.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:31.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:31.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:31.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.173][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.177][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.191][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.209][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.213][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.231][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.234][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.253][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:31.253][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:31.254][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:31.255][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:31.256][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:31.257][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.258][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.261][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.262][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.263][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.267][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.268][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.269][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.271][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.272][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.273][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.275][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.279][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.280][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.282][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.283][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.290][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.291][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.293][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.297][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.300][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.301][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.302][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.304][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.304][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.305][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.307][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.312][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.313][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.314][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.315][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.316][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.323][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.324][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.326][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.327][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.330][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.331][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.334][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.335][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.337][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.338][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.341][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.342][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.345][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:31.345][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:31.346][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.347][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.349][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.350][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.351][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.361][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.362][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.363][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.364][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.365][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.368][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.369][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.371][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.372][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.375][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.376][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.377][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.378][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.379][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.381][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.382][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.383][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.384][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.385][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.386][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.388][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.389][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.390][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.391][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.392][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:31.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.404][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.408][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.411][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.430][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.459][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.462][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.466][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.492][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.496][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.499][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.531][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-23 16:02:31.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:31.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:31.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:31.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:31.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:31.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:31.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:31.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.548][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.552][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.585][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.589][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.610][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.614][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.631][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:31.632][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:31.633][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:31.634][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:31.635][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:31.636][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.637][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.638][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.639][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.640][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.642][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.643][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.644][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.646][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.646][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.647][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.649][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.650][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.651][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.654][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.655][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.657][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.658][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.660][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.661][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.662][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.663][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.664][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.665][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.668][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.669][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.670][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.671][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.672][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.674][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.675][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.676][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.677][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.678][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.679][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.682][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.683][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.685][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.686][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.688][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.689][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.690][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.692][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.695][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.696][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.697][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.700][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.700][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:31.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.703][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.704][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.706][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.707][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.708][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.710][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.711][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.714][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.715][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.717][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.718][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.721][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:31.722][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:31.723][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.724][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.725][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.726][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.727][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.729][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.731][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.733][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.734][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.737][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.738][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.741][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.742][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.744][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.745][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.747][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.748][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.749][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.750][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.751][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.752][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.754][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.755][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.756][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.759][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.760][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.762][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:31.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:31.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:31.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.774][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.778][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.782][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:31.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:31.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:31.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.796][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:31.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:31.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:31.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:31.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:31.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:31.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.855][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.859][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.862][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:31.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:31.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:31.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:31.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:31.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-08-23 16:02:31.893][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:31.894][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:31.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:31.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:31.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:31.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:31.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:31.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:31.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:31.908][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:31.910][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:31.912][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-23 16:02:31.913][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:31.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:31.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:31.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:31.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:31.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:31.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:31.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:31.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:31.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:31.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:31.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:31.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:31.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:31.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:31.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:31.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:31.955][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:31.958][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:31.961][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-23 16:02:31.962][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:31.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:31.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:31.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:31.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:31.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:31.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:31.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:31.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:31.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:31.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:31.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:31.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:31.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:31.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:31.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:31.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:31.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:31.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:31.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:32.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:32.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:32.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:32.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:32.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:32.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:32.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:32.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:32.024][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:32.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:32.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:32.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:32.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:32.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:32.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:32.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:32.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.042][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.046][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.057][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.079][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.082][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.104][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.126][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:32.127][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:32.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:32.129][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:32.130][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:32.130][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.131][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.133][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.134][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.135][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.137][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.141][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.144][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.145][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.146][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.148][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.149][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.152][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.153][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.155][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.156][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.157][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.159][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.162][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.163][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.164][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.166][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.167][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.169][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.170][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.171][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.173][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.174][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.177][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.178][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.179][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.180][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.181][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.184][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.185][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.187][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.187][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.188][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.190][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.191][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.192][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.194][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.195][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.197][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.198][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.199][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.201][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.202][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.203][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.205][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.206][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.208][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.209][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.210][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.211][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.212][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.215][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.216][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:32.217][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:32.218][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.219][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.221][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.222][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.224][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.227][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.228][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.232][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.233][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.235][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.235][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.236][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.239][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.240][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.242][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.243][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.245][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.246][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.247][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.249][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.250][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.251][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.253][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.254][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.257][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.258][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.261][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:32.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.273][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.276][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.280][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.298][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.302][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.328][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.331][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.364][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.367][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.371][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.402][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-23 16:02:32.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:32.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:32.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:32.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:32.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:32.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:32.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.420][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.424][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.438][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.457][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.460][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.482][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.501][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:32.502][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:32.502][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:32.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:32.504][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:32.505][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.509][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.510][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.516][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.517][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.520][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.520][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.522][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.523][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.524][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.527][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.528][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.529][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.530][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.531][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.537][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.537][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.538][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.541][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.544][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.545][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.546][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.548][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.551][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.552][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.553][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.555][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.559][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.560][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.562][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.563][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.564][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.569][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.570][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.571][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.574][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.575][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.576][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.577][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.578][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.580][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.581][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.582][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.588][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.591][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.592][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.594][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.595][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:32.596][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:32.597][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.600][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.601][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.603][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.604][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.606][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.607][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.610][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.611][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.612][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.613][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.617][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.618][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.619][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.621][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.622][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.624][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.625][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.626][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.628][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.628][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.629][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.632][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.633][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.636][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.636][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.638][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.639][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:32.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.651][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.655][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.658][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.706][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.709][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.713][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.739][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.742][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.746][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.777][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-23 16:02:32.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:32.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:32.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:32.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:32.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:32.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:32.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:32.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.795][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.835][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.838][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.856][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.860][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.878][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:32.879][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:32.879][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:32.880][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:32.881][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:32.882][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.885][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.886][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.887][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.893][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.894][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.895][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.896][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.897][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.899][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.900][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.901][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.903][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.904][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.907][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.908][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.910][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.914][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.915][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.918][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.919][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.920][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.921][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.922][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.925][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.926][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.928][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.929][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.931][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.932][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.933][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.935][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.936][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.939][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.940][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.942][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.943][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.946][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.947][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:32.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.950][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.951][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.953][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.954][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.957][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.958][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.960][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:32.961][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:32.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.963][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.964][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:32.965][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:32.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.968][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:32.969][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:32.969][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:32.970][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:32.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.973][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:32.974][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:32.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:32.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.980][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:32.981][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:32.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:32.985][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:32.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.988][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:32.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.991][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.992][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:32.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.995][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.996][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:32.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:32.997][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:32.998][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:32.999][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.002][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.003][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.005][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.006][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.006][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.009][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:33.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.021][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.025][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.028][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.102][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.105][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-23 16:02:33.140][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:33.141][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:33.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:33.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:33.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:33.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:33.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:33.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:33.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:33.155][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:33.157][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:33.159][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-23 16:02:33.160][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:33.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:33.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:33.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:33.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:33.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:33.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:33.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:33.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:33.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:33.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:33.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:33.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:33.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:33.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:33.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:33.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:33.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:33.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:33.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:33.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:33.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:33.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:33.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:33.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:33.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:33.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:33.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:33.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:33.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:33.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:33.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:33.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:33.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:33.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:33.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:33.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:33.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:33.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:33.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:33.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:33.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:33.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:33.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:33.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:33.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:33.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:33.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:33.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:33.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:33.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:33.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:33.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:33.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:33.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:33.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:33.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:33.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:33.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:33.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:33.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:33.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:33.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:33.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:33.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:33.329][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:33.331][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:33.333][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-23 16:02:33.334][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:33.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:33.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:33.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:33.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:33.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:33.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:33.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:33.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:33.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:33.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:33.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:33.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:33.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:33.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:33.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:33.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:33.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:33.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:33.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:33.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:33.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:33.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:33.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:33.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:33.396][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:33.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:33.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:33.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:33.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:33.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:33.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:33.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:33.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.413][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.417][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.427][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.449][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.453][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.471][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.485][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.489][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.493][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:33.494][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:33.494][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:33.495][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:33.496][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:33.497][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.498][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.501][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.502][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.503][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.507][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.508][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.509][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.511][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.512][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.515][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.516][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.518][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.519][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.520][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.521][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.522][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.523][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.526][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.527][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.529][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.530][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.533][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.534][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.536][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.537][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.538][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.540][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.543][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.544][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.545][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.550][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.551][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.552][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.554][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.555][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.556][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.557][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.558][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.562][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.563][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.565][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.566][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.573][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.574][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.575][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.576][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.577][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.580][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.582][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.583][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.584][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.586][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.587][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:33.588][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:33.589][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.590][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.591][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.592][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.593][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.595][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.599][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.600][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.603][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.604][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.607][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.609][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.610][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.611][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.612][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.613][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.614][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.616][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.620][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.620][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.621][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.624][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.625][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.627][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.628][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.629][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.631][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:33.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.643][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.647][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.650][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.665][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.698][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.701][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.705][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.731][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.734][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.742][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.760][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.769][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-08-23 16:02:33.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:33.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:33.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:33.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:33.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:33.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:33.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:33.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.791][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.805][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.827][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.830][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.848][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.852][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.869][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:33.870][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:33.871][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:33.872][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:33.873][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:33.874][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.877][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.878][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.884][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.885][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.888][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.889][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.891][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.892][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.894][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.895][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.896][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.898][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.899][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.900][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.901][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.902][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.903][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.906][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.907][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.908][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.909][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.910][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.912][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.913][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.914][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.915][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.916][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.920][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.921][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.923][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.926][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.927][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.928][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.931][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.933][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.934][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.935][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.938][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.939][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:33.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.940][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.941][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.942][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.945][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.946][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.948][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.948][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.949][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.951][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.952][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.953][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.955][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.956][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.957][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.958][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.959][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:33.960][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:33.961][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:33.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:33.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.964][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.965][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:33.966][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:33.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:33.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.971][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.972][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:33.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:33.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.975][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.975][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:33.976][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:33.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.979][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.980][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:33.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.983][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.984][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:33.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.985][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.986][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.987][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:33.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.989][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.990][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.991][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:33.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.993][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:33.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:33.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:33.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:33.997][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:33.998][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:33.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.001][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:34.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.013][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.016][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.020][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.093][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.100][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.130][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-08-23 16:02:34.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:34.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:34.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:34.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:34.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:34.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:34.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:34.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.148][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.184][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.187][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.205][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.209][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.224][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.227][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:34.228][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:34.229][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:34.230][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:34.231][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:34.232][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.234][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.235][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.236][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.242][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.242][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.243][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.245][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.246][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.247][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.249][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.250][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.251][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.252][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.253][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.254][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.257][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.261][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.262][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.263][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.264][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.265][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.267][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.268][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.269][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.271][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.272][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.275][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.278][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.279][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.286][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.287][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.288][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.289][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.290][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.292][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.293][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.294][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.296][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.301][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.303][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.304][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.306][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.307][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.308][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.311][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.313][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.314][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.315][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.317][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.318][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.319][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.321][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:34.322][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:34.323][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.324][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.326][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.327][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.334][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.334][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.337][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.341][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.342][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.343][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.344][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.345][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.347][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.348][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.349][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.350][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.351][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.352][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.354][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.355][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.356][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.357][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.358][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.359][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.362][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:34.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.374][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.377][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.381][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.450][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.454][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.458][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.489][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-08-23 16:02:34.490][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:34.490][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:34.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:34.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:34.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:34.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:34.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:34.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:34.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:34.508][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:34.511][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:34.512][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-23 16:02:34.513][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:34.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:34.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:34.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:34.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:34.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:34.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:34.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:34.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:34.536][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:34.538][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:34.540][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-23 16:02:34.541][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:34.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:34.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:34.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:34.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:34.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:34.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:34.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:34.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:34.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:34.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:34.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:34.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:34.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:34.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:34.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:34.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:34.587][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:34.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:34.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:34.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:34.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:34.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:34.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:34.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:34.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.604][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.608][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.640][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.644][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.662][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.665][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.683][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:34.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:34.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.687][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:34.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:34.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.691][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:34.692][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:34.693][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:34.693][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:34.694][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:34.695][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.696][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.698][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.699][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.700][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.703][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.705][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.706][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.707][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.710][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.711][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.713][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.714][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.717][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.718][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.720][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.721][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.724][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.725][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.728][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.729][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.730][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.731][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.732][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.734][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.735][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.736][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.738][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:34.739][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:34.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.742][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.745][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.746][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.747][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.749][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.750][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.753][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.754][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.756][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.757][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.760][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.761][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.764][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.765][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:34.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.767][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.770][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.771][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.772][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.773][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.774][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.775][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.778][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.779][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.781][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.782][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.785][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:34.790][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:34.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.792][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:34.793][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:34.794][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.795][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.797][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.798][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.799][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.805][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.806][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.808][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.809][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.811][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.812][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.813][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.815][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.816][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.818][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.819][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.820][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.822][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.823][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.825][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.826][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.827][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.829][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.830][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.830][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.832][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.833][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:34.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.845][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.849][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.852][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:34.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:34.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:34.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:34.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.921][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.925][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.929][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:34.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:34.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:34.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:34.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:34.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.959][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-08-23 16:02:34.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:34.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:34.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:34.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:34.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:34.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:34.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:34.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:34.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:34.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.977][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.981][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:34.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:34.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:34.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:34.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:34.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:34.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:34.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.013][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.017][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.039][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.042][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.060][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.064][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.067][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:35.068][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:35.069][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:35.070][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:35.071][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:35.072][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.073][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.075][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.076][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.078][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.079][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.082][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.082][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.083][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.085][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.086][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.087][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.089][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.090][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.092][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.093][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.094][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.096][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.097][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.098][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.100][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.101][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.103][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.104][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.105][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.107][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.107][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.108][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.111][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.114][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.114][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.115][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.117][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.118][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.122][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.123][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.124][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.129][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.132][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.133][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.136][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.137][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.139][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.140][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.142][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.143][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.144][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.147][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.150][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.151][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.153][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.154][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.155][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.157][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.158][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.161][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.162][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.165][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:35.166][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:35.166][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.169][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.170][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.171][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.173][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.175][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.177][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.178][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.181][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.182][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.184][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.185][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.185][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.187][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.188][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.189][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.191][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.192][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.193][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.195][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.196][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.198][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.199][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.200][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.202][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.203][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.205][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.206][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.207][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.210][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:35.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.222][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.225][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.229][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.244][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.280][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.284][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.288][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.313][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.317][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.320][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.331][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.351][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-23 16:02:35.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:35.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:35.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:35.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:35.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:35.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:35.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:35.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.369][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.372][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.405][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.408][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.426][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.430][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.448][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.452][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.456][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:35.456][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:35.457][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:35.458][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:35.459][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:35.460][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.461][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.464][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.465][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.471][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.472][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.474][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.474][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.475][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.478][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.479][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.481][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.482][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.483][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.485][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.486][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.488][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.489][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.490][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.492][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.493][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.496][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.497][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.499][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.500][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.501][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.503][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.504][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.507][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.509][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.510][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.511][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.513][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.520][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.521][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.522][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.525][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.526][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.527][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.528][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.529][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.531][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.532][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.533][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.535][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.536][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.538][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.543][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.544][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.545][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.546][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.547][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.549][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.550][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.551][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.552][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.553][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.554][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.557][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:35.558][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:35.559][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.560][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.562][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.563][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.569][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.573][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.574][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.576][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.576][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.577][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.580][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.581][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.584][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.585][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.586][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.587][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.588][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.591][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.592][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.594][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.595][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.597][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.598][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:35.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.610][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.613][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.617][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.635][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.687][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.690][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.694][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-08-23 16:02:35.726][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:35.727][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:35.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:35.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:35.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:35.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:35.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:35.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:35.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:35.740][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:35.742][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:35.744][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-23 16:02:35.745][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:35.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:35.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:35.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:35.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:35.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:35.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:35.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:35.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:35.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:35.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:35.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:35.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:35.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:35.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:35.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:35.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:35.791][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:35.793][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:35.796][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-23 16:02:35.797][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:35.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:35.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:35.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:35.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:35.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:35.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:35.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:35.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:35.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:35.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:35.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:35.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:35.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:35.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:35.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:35.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:35.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:35.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:35.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:35.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:35.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:35.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:35.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:35.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:35.859][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:35.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:35.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:35.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:35.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:35.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:35.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:35.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:35.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.876][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.880][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.891][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.913][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.916][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.938][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:35.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:35.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:35.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:35.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:35.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.956][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.960][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:35.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.964][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:35.965][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:35.965][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:35.966][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:35.967][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:35.968][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:35.969][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:35.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.971][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.972][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:35.973][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:35.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:35.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.979][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:35.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:35.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.983][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:35.984][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:35.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.985][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.986][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.987][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:35.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.989][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.990][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.991][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:35.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.993][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:35.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:35.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:35.997][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:35.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.001][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.002][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.008][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.009][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.012][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.013][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.015][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.016][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.016][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.019][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.022][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.023][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.024][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.025][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.029][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.030][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.031][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.033][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.034][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.036][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.037][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.038][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.039][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.040][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.041][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.043][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.044][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.045][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.047][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.048][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.050][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.051][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.052][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.055][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.055][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.057][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.058][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.059][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.062][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.063][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.064][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.065][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:36.066][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:36.067][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.068][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.070][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.071][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.072][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.073][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.074][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.078][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.079][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.082][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.084][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.086][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.088][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.089][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.091][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.092][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.093][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.095][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.095][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.099][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.100][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.102][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.102][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.103][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.106][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.107][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.110][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:36.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.122][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.125][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.129][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.151][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.177][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.180][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.184][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.210][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.213][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.236][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.255][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-23 16:02:36.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:36.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:36.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:36.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:36.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:36.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:36.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:36.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.272][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.276][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.308][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.311][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.329][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.333][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.347][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.351][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.355][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.358][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:36.359][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:36.360][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:36.361][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:36.362][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:36.363][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.364][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.366][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.367][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.369][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.370][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.372][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.373][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.374][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.376][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.377][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.378][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.380][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.383][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.384][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.385][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.387][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.388][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.388][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.390][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.391][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.392][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.394][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.395][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.396][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.398][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.399][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.401][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.402][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.403][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.405][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.406][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.407][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.408][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.409][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.410][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.413][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.414][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.420][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.421][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.424][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.424][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.426][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.427][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.428][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.430][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.431][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.432][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.433][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.434][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.435][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.438][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.439][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.441][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.441][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.442][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.444][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.445][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.446][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.449][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.450][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.451][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.452][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.453][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.456][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:36.457][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:36.458][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.459][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.461][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.462][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.467][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.468][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.471][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.472][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.473][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.478][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.479][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.480][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.482][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.483][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.484][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.485][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.486][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.487][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.490][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.491][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.496][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.497][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.498][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.501][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.502][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.504][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.504][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:36.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.516][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.520][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.523][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.571][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.574][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.578][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.603][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.607][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.610][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.632][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.642][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-23 16:02:36.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:36.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:36.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:36.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:36.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:36.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:36.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:36.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.659][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.663][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.678][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.696][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.699][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.718][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.721][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.743][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.747][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.750][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:36.751][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:36.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:36.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:36.754][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:36.755][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.758][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.759][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.762][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.765][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.772][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.772][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.773][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.776][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.777][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.780][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.781][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.783][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.784][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.787][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.788][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.789][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.790][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.791][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.793][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.794][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.795][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.797][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.798][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.801][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.802][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.804][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.805][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.811][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.811][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.812][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.814][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.815][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.816][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.818][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.819][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.822][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.823][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:36.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.825][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.826][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.827][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.829][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.830][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.832][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.833][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.834][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.836][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.837][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.839][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.840][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.841][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.842][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.843][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.844][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:36.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.846][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.847][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:36.848][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:36.849][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.851][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.852][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.853][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.855][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.859][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.860][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.863][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.864][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.866][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.867][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.867][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.869][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.870][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.871][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.874][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.877][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.878][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.881][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:36.885][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:36.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.888][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:36.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:36.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:36.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.900][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.904][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.907][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:36.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:36.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:36.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:36.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:36.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:36.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:36.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:36.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:36.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.977][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.985][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.988][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:36.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:36.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:36.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:36.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:36.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:37.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:37.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.019][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-23 16:02:37.020][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:37.020][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:37.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:37.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:37.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:37.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:37.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:37.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:37.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:37.034][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:37.036][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:37.038][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-23 16:02:37.039][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:37.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:37.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:37.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:37.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:37.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:37.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:37.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:37.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:37.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:37.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:37.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:37.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:37.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:37.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:37.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:37.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:37.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:37.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:37.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:37.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:37.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:37.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:37.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:37.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:37.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:37.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:37.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:37.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:37.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:37.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:37.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:37.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:37.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:37.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:37.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:37.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:37.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:37.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:37.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:37.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:37.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:37.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:37.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:37.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:37.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:37.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:37.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:37.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:37.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:37.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:37.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:37.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:37.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:37.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:37.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:37.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:37.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:37.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:37.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:37.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:37.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:37.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:37.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:37.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-23 16:02:37.201][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:37.204][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:37.205][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-23 16:02:37.206][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:37.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:37.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:37.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:37.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:37.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:37.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:37.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:37.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:37.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:37.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:37.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:37.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:37.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:37.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:37.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:37.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:37.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:37.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:37.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:37.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:37.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:37.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:37.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:37.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:37.272][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:37.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:37.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:37.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:37.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:37.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:37.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:37.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:37.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.290][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.294][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.326][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.330][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.348][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.352][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:37.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:37.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:37.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.370][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.373][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.377][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:37.378][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:37.379][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:37.380][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:37.381][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:37.382][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.383][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.384][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.385][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.386][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.388][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.389][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.392][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.393][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.395][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.397][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.401][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.402][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.403][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.404][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.407][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.408][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.410][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.411][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.412][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.413][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.414][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.415][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.417][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.418][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:37.419][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:37.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.421][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.422][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.424][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.425][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.426][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.428][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.429][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.430][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.432][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.433][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.435][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.439][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.440][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.442][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.443][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.444][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.447][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.448][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.449][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.450][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.451][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.453][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.454][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.455][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.457][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.458][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.461][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.462][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.465][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:37.466][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:37.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.467][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.468][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.469][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.476][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.477][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.478][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.479][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:37.480][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:37.481][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.482][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.485][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.486][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.492][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.493][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.495][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.496][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.498][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.499][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.500][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.501][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.502][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.503][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.505][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.506][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.507][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.509][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.510][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.512][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.513][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.514][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.516][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.516][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:37.517][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:37.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.520][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.521][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.524][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:37.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.535][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.539][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.543][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.590][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.594][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.597][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.623][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.627][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.630][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:37.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:37.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:37.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:37.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:37.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:37.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.649][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.662][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-08-23 16:02:37.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:37.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:37.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:37.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:37.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:37.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:37.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:37.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.679][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.683][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.698][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.720][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.723][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.741][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.745][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:37.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:37.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.752][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:37.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:37.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.763][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.766][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.770][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:37.771][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:37.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:37.772][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:37.773][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:37.774][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.778][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.779][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.780][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.785][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.788][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.789][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.795][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.796][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.799][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.800][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.802][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.803][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.804][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.805][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.806][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.807][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.809][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.810][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:37.811][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:37.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.812][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.813][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.814][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.816][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.817][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.818][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.820][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.823][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.824][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.825][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.827][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.831][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.835][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.836][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.837][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.838][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.839][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.841][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.842][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.843][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:37.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.844][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.845][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.846][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.848][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.849][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.850][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.851][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.852][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.853][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.855][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.856][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:37.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:37.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.860][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.861][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.863][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.864][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:37.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.866][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.867][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:37.868][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:37.869][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.870][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.871][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.872][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.873][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.875][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.877][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.879][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.879][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.880][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.882][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.883][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.884][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.887][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.888][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.889][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.890][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.891][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.893][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.894][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.895][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.897][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.898][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:37.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.900][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.901][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:37.902][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:37.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.904][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.905][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:37.905][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:37.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.908][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:37.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:37.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:37.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.920][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.924][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.927][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:37.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:37.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:37.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:37.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:37.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:37.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:37.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:37.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:37.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:37.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:37.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:37.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.001][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.008][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.022][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.038][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-08-23 16:02:38.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:38.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:38.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:38.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:38.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:38.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:38.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:38.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.056][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.060][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.074][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.092][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.096][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.114][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.118][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:38.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:38.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.139][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:38.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:38.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.143][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:38.144][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:38.145][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:38.146][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:38.146][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:38.147][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.148][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.151][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.152][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.155][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.157][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.158][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.159][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.162][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.163][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.165][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.169][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.170][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.173][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.179][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.180][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.181][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.183][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.186][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.190][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.190][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:38.191][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:38.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.193][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.194][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.197][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.198][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.202][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.205][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.206][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.208][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.209][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.210][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.211][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.213][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.215][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.217][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.218][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.219][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.220][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.222][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.223][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.224][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.226][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.226][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.230][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.231][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.233][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.233][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.234][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.237][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.238][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.240][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.241][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:38.241][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:38.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.243][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.244][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:38.245][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:38.246][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.249][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.249][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.250][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.252][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.257][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.258][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.260][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.261][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.263][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.264][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.266][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.267][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.273][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.274][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.275][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.277][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.278][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.281][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.282][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.285][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:38.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.297][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.300][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.304][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.319][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.374][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.377][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.412][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-08-23 16:02:38.413][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:38.413][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-23 16:02:38.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:38.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:38.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:38.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:38.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:38.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:38.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:38.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:38.479][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:38.481][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:38.483][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-23 16:02:38.484][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-23 16:02:38.486][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:38.489][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:38.491][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-23 16:02:38.492][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:38.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:38.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:38.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:38.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:38.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:38.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:38.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:38.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:38.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:38.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:38.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:38.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:38.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:38.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:38.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:38.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:38.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:38.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:38.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:38.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:38.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:38.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:38.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:38.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:38.553][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:38.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:38.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:38.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:38.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:38.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:38.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:38.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:38.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.571][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.574][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.607][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.611][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.633][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.651][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:38.652][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:38.653][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:38.653][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:38.654][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:38.655][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.659][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.660][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.662][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.666][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.670][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.671][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.673][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.674][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.677][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.678][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.681][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.681][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.684][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.692][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.695][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.696][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.698][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.699][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.700][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.703][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.704][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.705][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.706][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.707][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.713][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.714][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.717][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.718][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.720][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.724][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.725][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.726][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.727][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.728][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.730][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.731][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.732][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.734][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.734][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.735][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.737][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.738][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.739][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.742][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.743][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.744][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.745][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:38.746][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:38.747][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.750][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.751][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.752][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.755][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.757][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.758][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.761][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.762][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.765][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.766][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.768][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.769][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.772][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.773][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.776][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.776][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.778][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.779][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.780][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.783][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.784][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.786][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.787][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.789][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.790][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:38.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.802][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.805][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.809][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.831][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.857][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.861][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.864][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:38.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.890][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.894][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.897][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:38.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:38.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:38.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.916][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:38.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:38.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.933][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-23 16:02:38.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:38.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:38.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:38.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:38.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:38.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:38.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:38.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:38.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:38.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.950][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:38.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:38.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:38.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:38.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:38.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:38.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.986][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.990][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:38.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:38.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:38.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:38.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.008][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.022][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.029][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:39.030][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:39.031][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:39.032][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:39.033][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:39.034][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.036][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.037][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.038][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.042][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.045][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.045][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.048][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.053][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.055][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.056][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.059][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.060][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.063][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.065][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.066][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.067][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.070][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.071][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.073][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.074][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.076][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.077][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.080][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.081][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.088][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.091][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.092][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.095][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.099][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.099][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.102][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.103][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.106][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.107][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.108][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.109][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.110][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.113][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.117][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.118][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.120][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:39.121][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:39.122][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.126][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.127][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.133][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.134][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.136][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.136][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.137][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.140][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.141][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.144][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.145][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.147][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.148][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.151][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.152][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.155][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.156][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.157][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.158][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.159][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.162][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.163][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.165][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:39.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.182][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.185][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.189][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.236][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.240][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.244][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.269][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.273][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.276][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.307][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-23 16:02:39.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:39.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:39.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:39.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:39.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:39.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:39.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:39.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.325][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.329][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.361][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.365][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.387][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.405][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:39.406][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:39.407][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:39.408][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:39.409][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:39.410][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.410][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.413][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.414][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.424][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.425][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.427][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.428][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.429][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.435][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.436][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.438][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.441][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.442][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.443][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.445][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.446][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.446][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.449][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.450][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.453][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.454][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.456][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.457][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.460][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.461][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.462][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.467][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.468][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.470][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.474][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.475][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.477][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.478][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.481][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.485][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.488][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.489][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.492][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.493][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.495][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.496][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.498][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.499][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:39.500][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:39.501][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.502][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.503][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.504][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.505][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.507][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.511][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.512][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.515][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.516][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.518][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.519][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.521][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.522][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.523][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.525][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.526][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.529][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.530][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.533][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.533][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.536][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.537][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.540][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:39.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.552][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.555][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.559][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.577][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.581][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.632][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.671][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-23 16:02:39.672][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:39.673][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:39.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:39.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:39.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:39.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:39.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:39.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:39.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:39.686][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:39.688][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:39.690][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-23 16:02:39.691][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:39.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:39.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:39.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:39.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:39.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:39.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:39.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:39.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:39.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:39.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:39.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:39.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:39.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:39.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:39.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:39.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:39.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:39.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:39.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:39.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:39.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:39.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:39.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:39.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:39.753][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:39.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:39.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:39.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:39.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:39.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:39.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:39.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:39.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.770][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.774][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.807][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.810][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.828][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.850][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:39.851][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:39.852][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:39.853][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:39.854][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:39.855][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.856][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.858][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.858][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.859][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.861][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.866][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.867][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.868][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.873][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.874][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.876][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.877][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.879][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.880][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.881][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.883][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.884][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.885][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.887][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.888][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.890][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.891][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.894][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.894][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.895][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.898][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.903][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.906][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.907][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.912][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.913][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.914][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.917][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.918][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.920][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.921][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.924][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.925][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.926][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.927][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.928][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.931][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.932][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.934][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.935][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.938][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.939][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.942][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.943][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.945][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:39.946][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:39.947][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.948][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.950][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.951][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:39.952][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:39.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.953][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:39.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.957][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.958][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:39.959][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:39.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.960][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:39.962][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:39.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.964][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.965][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:39.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.968][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.969][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:39.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.971][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.972][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.973][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:39.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.975][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.975][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:39.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.979][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.980][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:39.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.983][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:39.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:39.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.985][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.986][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:39.987][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:39.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.989][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.990][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:39.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:39.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:39.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:39.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:39.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.005][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.009][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.024][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.057][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.060][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.064][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.090][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.093][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.097][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.108][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.129][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-23 16:02:40.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:40.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:40.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:40.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:40.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:40.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:40.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:40.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.150][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.154][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.187][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.191][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.209][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.213][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.231][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:40.231][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:40.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:40.233][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:40.234][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:40.235][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.239][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.240][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.245][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.246][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.247][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.248][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.249][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.252][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.253][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.254][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.256][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.257][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.260][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.263][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.264][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.265][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.266][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.267][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.268][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.271][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.273][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.274][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.275][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.277][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.278][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.282][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.282][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.288][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.289][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.290][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.291][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.295][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.296][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.297][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.299][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.300][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.301][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.302][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.303][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.304][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.306][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.307][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.308][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.310][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.313][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.314][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.315][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.317][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.318][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.319][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.321][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:40.322][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:40.323][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.324][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.327][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.328][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.334][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.335][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.338][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.339][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.341][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.342][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.345][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.346][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.347][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.348][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.349][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.352][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.353][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.356][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.357][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.359][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.360][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.363][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:40.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.375][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.379][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.382][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.405][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.456][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.459][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.463][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.485][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.493][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-08-23 16:02:40.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:40.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:40.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:40.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:40.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:40.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:40.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:40.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.511][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.515][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.526][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.548][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.552][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.592][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:40.593][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:40.594][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:40.594][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:40.595][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:40.596][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.597][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.600][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.601][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.603][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.603][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.604][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.606][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.607][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.610][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.611][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.612][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.613][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.617][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.618][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.619][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.621][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.622][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.624][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.625][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.626][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.633][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.634][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.636][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.639][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.643][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.643][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.644][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.646][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.647][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.648][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.651][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.654][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.660][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.661][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.662][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.664][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.665][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.666][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.668][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.671][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.672][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.673][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.674][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.675][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.676][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.678][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.679][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.680][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.682][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.683][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.686][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:40.687][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:40.688][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.689][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.691][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.692][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.695][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.696][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.698][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.698][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.701][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.702][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.703][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.705][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.706][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.706][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.709][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.710][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.713][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.714][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.715][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.716][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.717][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.720][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.721][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.722][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.723][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.724][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.726][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.727][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:40.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.739][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.742][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.746][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.761][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:40.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.823][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.827][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.834][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:40.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:40.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:40.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:40.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.854][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-08-23 16:02:40.855][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:40.856][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:40.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:40.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:40.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:40.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:40.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:40.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:40.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:40.873][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:40.876][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:40.879][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-23 16:02:40.880][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:40.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:40.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:40.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:40.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:40.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:40.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:40.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:40.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:40.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:40.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:40.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:40.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:40.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:40.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:40.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:40.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:40.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:40.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:40.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:40.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:40.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:40.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:40.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:40.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:40.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:40.942][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:40.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:40.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:40.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:40.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:40.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:40.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:40.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:40.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:40.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:40.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.960][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.963][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:40.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:40.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:40.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:40.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:40.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:40.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:40.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:40.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.996][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:40.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:40.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:40.999][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.017][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.021][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.039][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:41.040][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:41.041][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:41.042][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:41.043][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:41.044][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.046][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.047][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.048][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.050][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.055][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.057][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.058][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.062][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.063][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.064][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.065][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.066][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.068][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.069][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.070][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.073][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.074][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.076][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.077][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.080][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.081][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.082][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.083][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.084][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.087][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.088][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.091][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.092][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.093][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.098][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.099][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.102][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.104][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.105][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.106][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.108][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.109][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.110][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.117][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.118][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.121][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.122][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.124][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.125][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.127][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.128][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.129][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.130][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.131][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.132][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.135][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:41.136][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:41.137][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.140][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.141][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.147][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.152][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.155][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.157][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.158][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.159][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.162][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.163][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.165][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.166][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.169][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.170][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.172][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.173][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.176][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.177][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.178][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.179][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:41.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.191][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.195][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.213][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.246][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.250][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.253][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.279][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.283][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.286][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.318][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-08-23 16:02:41.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:41.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:41.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:41.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:41.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:41.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:41.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:41.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.336][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.339][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.386][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.389][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.407][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.411][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.429][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:41.430][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:41.431][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:41.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:41.433][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:41.434][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.435][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.436][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.437][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.438][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.440][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.441][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.442][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.444][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.445][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.448][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.449][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.451][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.452][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.454][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.455][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.456][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.458][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.458][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.459][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.461][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.466][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.467][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.468][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.469][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.470][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.472][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.473][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.474][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.476][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.477][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.479][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.480][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.481][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.486][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.487][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.490][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.491][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.492][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.493][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.494][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.495][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.498][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.499][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.501][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.502][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.504][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.506][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.509][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.510][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.512][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.516][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.517][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.520][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:41.521][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:41.522][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.523][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.525][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.526][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.533][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.534][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.536][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.537][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.540][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.541][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.543][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.544][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.545][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.547][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.548][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.550][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.551][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.552][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.554][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.555][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.557][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.558][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.559][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.562][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:41.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.574][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.578][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.582][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.656][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.660][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.663][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.694][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-08-23 16:02:41.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:41.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:41.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:41.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:41.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:41.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:41.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:41.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.712][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.715][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.748][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.751][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.770][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.773][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.792][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:41.792][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:41.793][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:41.794][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:41.795][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:41.796][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.799][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.800][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.800][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.802][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.806][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.807][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.808][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.809][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.810][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.811][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.814][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.815][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.817][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.817][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.818][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.820][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.821][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.824][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.825][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.826][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.827][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.828][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.829][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.831][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.832][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.835][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.836][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.838][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.839][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.840][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.842][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.843][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.844][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.850][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.851][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.857][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.858][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.858][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.861][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.862][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.864][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.865][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.866][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:41.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.868][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.869][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.871][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.872][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.873][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.874][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.875][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.876][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.878][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.879][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.880][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.882][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.882][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.883][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.885][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.886][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:41.887][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:41.888][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.889][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.890][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.891][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.892][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.894][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.898][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.899][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.901][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.903][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.905][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.906][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.908][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.909][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.910][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.912][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:41.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.915][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.916][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.917][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:41.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.920][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:41.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:41.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.922][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.923][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:41.924][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:41.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.926][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.927][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:41.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:41.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:41.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.939][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.942][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.946][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:41.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:41.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:41.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.961][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:41.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:41.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:41.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:41.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:41.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:41.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:41.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:41.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.016][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.020][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.023][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.038][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.054][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-08-23 16:02:42.055][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:42.056][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:42.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:42.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:42.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:42.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:42.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:42.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:42.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:42.074][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:42.076][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:42.078][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-23 16:02:42.079][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-23 16:02:42.082][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:42.084][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:42.086][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-23 16:02:42.087][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:42.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:42.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:42.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:42.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:42.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:42.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:42.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:42.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:42.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:42.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:42.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:42.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:42.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:42.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:42.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:42.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:42.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:42.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:42.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:42.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:42.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:42.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:42.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:42.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:42.153][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:42.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:42.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:42.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:42.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:42.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:42.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:42.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:42.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.171][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.174][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.207][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.210][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.228][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.232][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.254][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.257][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:42.258][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:42.259][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:42.260][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:42.261][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:42.262][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.263][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.265][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.266][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.266][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.268][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.272][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.273][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.274][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.275][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.276][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.279][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.280][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.281][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.283][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.284][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.284][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.287][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.288][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.291][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.292][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.294][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.295][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.298][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.302][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.302][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.304][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.305][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.306][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.309][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.310][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.312][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.313][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.319][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.320][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.321][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.323][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.324][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.327][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.328][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.330][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.331][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.334][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.335][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.338][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.339][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.345][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.346][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.349][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.350][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.353][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.353][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.356][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.357][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.359][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.360][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:42.361][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:42.361][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.362][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.365][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.366][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.368][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.369][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.370][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.371][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.372][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.373][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.375][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.376][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.377][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.378][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.379][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.380][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.383][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.384][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.385][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.386][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.390][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.391][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.393][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.394][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.396][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.397][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.398][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.401][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.402][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.403][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.404][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:42.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.416][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.420][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.423][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.438][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.471][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.474][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.478][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.504][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.508][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.511][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.534][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.543][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-23 16:02:42.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:42.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:42.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:42.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:42.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:42.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:42.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:42.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.560][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.564][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.601][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.604][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.626][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.644][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.651][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:42.652][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:42.653][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:42.654][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:42.655][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:42.656][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.657][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.659][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.660][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.662][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.666][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.670][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.671][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.674][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.677][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.678][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.681][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.682][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.684][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.688][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.689][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.691][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.692][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.695][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.696][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.698][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.698][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.699][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.701][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.702][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.703][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.705][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.706][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.707][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.710][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.713][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.714][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.715][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.716][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.717][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.720][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.724][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.725][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.726][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.727][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.728][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.730][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.731][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.732][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.733][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.734][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.735][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.737][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.738][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.739][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.742][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.743][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.744][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.745][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.746][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:42.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.749][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:42.750][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:42.751][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.752][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.754][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.755][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.757][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.759][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.762][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.763][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.765][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.766][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.769][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.770][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.772][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.773][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.780][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.781][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.783][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.784][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.787][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.788][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.789][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.790][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.791][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.793][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.794][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:42.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.806][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.810][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.813][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.865][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.869][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.872][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:42.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.898][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.901][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.905][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:42.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:42.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:42.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:42.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:42.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.936][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-23 16:02:42.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:42.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:42.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:42.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:42.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:42.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:42.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:42.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:42.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:42.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.953][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.957][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:42.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:42.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:42.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:42.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:42.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:42.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:42.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.990][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.993][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:42.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:42.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:42.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:42.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.033][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.037][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.041][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:43.042][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:43.042][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:43.043][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:43.044][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:43.045][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.049][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.050][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.055][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.056][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.057][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.059][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.059][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.060][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.062][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.063][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.064][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.070][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.071][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.072][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.073][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.074][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.078][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.079][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.081][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.082][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.084][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.085][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.088][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.089][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.090][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.091][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.092][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.093][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.095][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.096][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.097][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.099][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.100][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.102][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.103][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.106][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.110][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.111][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.113][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.114][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.117][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.118][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.120][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.121][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.124][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.125][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.127][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.128][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.129][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.130][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.131][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.132][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.135][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.136][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.137][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.138][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.139][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.142][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:43.143][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:43.144][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.145][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.147][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.148][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.153][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.154][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.155][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.157][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.165][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.168][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.169][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.172][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.173][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.176][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.177][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.178][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.179][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.180][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.183][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:43.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.195][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.272][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.276][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.279][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.315][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-23 16:02:43.316][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:43.316][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:43.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:43.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:43.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:43.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:43.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:43.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:43.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:43.330][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:43.332][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:43.334][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-23 16:02:43.335][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:43.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:43.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:43.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:43.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:43.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:43.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:43.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:43.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:43.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:43.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:43.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:43.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:43.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:43.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:43.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:43.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:43.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:43.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:43.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:43.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:43.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:43.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:43.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:43.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:43.398][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:43.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:43.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:43.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:43.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:43.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:43.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:43.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:43.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.416][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.420][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.453][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.456][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.475][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.497][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.501][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.504][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:43.505][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:43.506][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:43.507][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:43.508][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:43.509][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.512][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.520][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.521][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.522][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.523][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.524][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.527][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.528][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.529][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.530][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.531][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.534][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.535][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.537][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.538][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.539][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.541][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.542][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.544][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.545][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.546][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.548][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.549][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.551][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.552][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.558][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.559][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.560][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.563][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.564][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.565][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.567][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.570][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.571][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.574][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.575][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.577][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.578][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.579][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.581][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.582][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.583][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.585][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.586][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.591][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.592][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.593][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.595][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.596][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.597][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.599][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.600][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.603][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.604][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.606][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.607][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:43.608][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:43.608][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.609][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.611][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.612][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.613][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.615][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.618][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.619][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.620][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.622][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.623][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.624][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.626][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.627][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.629][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.630][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.631][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.633][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.634][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.637][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.641][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.642][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.643][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.644][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.645][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.648][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.649][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.651][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:43.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.663][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.671][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.718][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.722][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.726][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.752][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.755][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.759][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.774][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.791][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-23 16:02:43.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:43.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:43.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:43.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:43.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:43.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:43.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:43.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.812][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.816][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.852][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.891][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.895][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.899][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:43.899][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:43.900][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:43.901][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:43.902][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:43.903][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.904][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.907][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.908][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.914][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.915][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.917][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.918][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.920][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.921][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.922][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.924][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.925][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.928][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.929][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.931][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.932][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.935][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.936][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.939][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.942][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.943][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.946][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.947][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.950][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:43.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.953][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:43.954][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:43.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:43.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.960][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.961][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:43.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:43.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.963][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.964][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:43.965][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:43.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.968][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.969][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:43.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.970][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.971][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.972][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:43.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.975][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.976][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:43.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.979][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.980][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:43.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.982][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.983][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:43.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.985][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.986][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:43.987][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:43.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.989][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:43.990][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:43.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.992][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.993][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.994][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:43.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:43.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:43.997][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:43.998][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:43.998][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:43.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.002][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.003][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.005][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.009][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.010][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.012][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.013][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.014][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.016][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.016][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.017][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.020][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.023][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.024][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.025][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.026][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.027][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.028][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.030][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.031][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.034][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.034][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.035][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.041][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.042][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:44.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.054][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.058][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.061][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.131][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.134][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.138][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.145][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.169][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-08-23 16:02:44.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:44.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:44.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:44.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:44.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:44.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:44.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:44.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.187][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.190][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.201][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.223][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.227][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.245][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.249][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.267][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.271][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.275][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:44.276][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:44.277][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:44.277][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:44.278][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:44.284][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.287][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.288][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.289][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.295][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.296][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.298][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.298][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.299][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.302][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.303][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.306][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.307][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.309][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.310][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.312][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.313][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.314][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.316][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.317][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.317][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.319][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.320][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.321][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.324][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.325][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.327][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.328][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.331][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.334][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.335][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.336][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.338][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.341][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.342][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.346][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.347][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.349][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.350][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.353][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.354][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.356][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.357][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.359][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.360][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.361][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.363][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.364][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.365][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.366][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.367][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.371][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.372][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.374][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.375][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.377][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.378][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:44.379][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:44.380][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.381][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.383][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.384][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.385][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.388][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.390][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.391][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.394][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.395][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.398][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.399][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.401][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.402][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.403][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.404][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.408][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.409][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.410][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.411][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.412][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.413][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.416][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.417][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.420][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:44.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.432][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.435][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.439][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.462][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.510][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.514][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.517][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-08-23 16:02:44.553][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:44.554][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-23 16:02:44.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:44.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:44.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:44.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:44.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:44.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:44.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-23 16:02:44.567][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-23 16:02:44.569][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-23 16:02:44.573][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-23 16:02:44.574][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-23 16:02:44.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:44.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:44.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:44.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:44.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:44.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:44.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:44.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:44.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:44.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:44.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:44.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:44.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:44.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:44.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:44.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:44.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:44.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:44.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:44.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:44.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:44.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:44.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:44.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-23 16:02:44.636][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-23 16:02:44.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:44.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:44.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:44.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:44.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:44.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:44.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:44.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.654][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.658][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.691][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.694][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.713][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.735][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.742][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:44.743][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:44.744][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:44.745][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:44.745][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:44.746][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.747][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.749][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.750][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.751][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.755][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.757][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.758][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.761][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.762][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.764][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.765][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.772][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.773][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.774][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.780][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.781][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.783][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.783][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.784][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.787][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.788][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.790][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.791][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.791][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.793][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.794][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.795][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.797][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.798][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.799][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.801][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.802][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.806][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.808][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.809][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.811][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.818][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.819][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.820][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.823][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.824][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.825][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.826][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.827][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.829][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.830][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.831][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.832][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.833][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.834][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.836][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.837][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.838][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.840][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.840][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.841][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:44.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.843][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.844][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:44.845][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:44.846][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.847][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.849][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.850][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.857][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.858][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.860][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.861][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.864][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.865][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.866][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.867][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.868][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.870][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.871][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.872][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.874][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.874][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.878][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.879][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.881][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.882][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:44.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:44.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:44.886][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:44.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.889][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:44.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:44.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:44.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.904][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:44.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:44.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:44.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:44.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:44.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:44.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:44.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:44.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.956][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.960][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.964][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:44.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:44.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:44.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.990][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.993][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:44.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:44.997][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:44.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.020][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.032][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-08-23 16:02:45.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:45.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:45.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:45.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:45.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:45.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:45.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:45.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.053][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.068][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.086][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.129][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.133][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.137][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:45.138][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:45.138][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:45.139][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:45.140][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:45.141][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.142][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.144][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.145][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.146][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.152][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.153][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.155][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.156][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.157][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.162][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.163][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.164][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.166][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.167][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.169][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.170][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.171][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.173][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.174][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.175][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.177][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.181][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.182][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.184][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.184][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.185][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.187][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.188][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.191][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.192][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.193][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.198][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.199][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.202][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.203][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.205][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.206][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.207][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.210][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.211][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.213][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.214][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.216][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.217][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.218][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.221][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.222][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.223][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.224][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.225][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.227][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.228][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.229][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.231][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.232][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.234][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.235][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:45.236][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:45.237][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.238][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.240][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.241][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.242][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.243][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.248][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.255][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.256][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.257][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.260][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.261][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.263][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.266][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.267][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.268][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.270][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.271][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.273][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.274][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.275][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.277][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.278][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.279][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.281][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:45.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.293][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.297][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.300][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.319][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.370][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.373][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.377][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.381][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.408][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-08-23 16:02:45.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-23 16:02:45.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:45.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:45.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:45.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:45.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:45.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-23 16:02:45.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.426][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.444][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.463][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.466][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.485][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.496][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.511][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.514][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.518][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:45.519][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-23 16:02:45.520][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-23 16:02:45.520][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-23 16:02:45.521][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-23 16:02:45.522][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.523][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.526][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.527][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.533][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.534][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.536][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.536][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.537][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.540][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.541][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.543][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.544][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.545][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.547][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.548][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.550][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.551][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.552][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.554][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.554][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.555][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.557][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.558][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.559][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.562][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.563][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.564][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.565][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.566][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.569][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.570][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.571][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.572][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.573][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.575][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.579][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.580][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.582][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.583][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.584][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.586][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.588][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.590][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.591][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-23 16:02:45.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.594][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.595][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.596][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.597][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.598][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.600][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.601][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.602][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.604][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.604][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.607][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.608][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.609][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.611][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.612][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.613][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-23 16:02:45.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.614][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.615][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:45.616][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-23 16:02:45.617][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.618][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.620][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.621][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.622][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.625][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.627][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.628][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.629][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.631][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.632][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.634][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.636][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.638][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.639][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.640][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.641][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.646][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.647][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.649][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.650][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.651][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.652][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.653][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.654][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.657][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-23 16:02:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-23 16:02:45.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-23 16:02:45.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.673][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.676][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-23 16:02:45.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-23 16:02:45.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-23 16:02:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.695][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-23 16:02:45.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-23 16:02:45.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-23 16:02:45.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-23 16:02:45.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-23 16:02:45.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-23 16:02:45.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-23 16:02:45.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.751][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.755][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.759][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-23 16:02:45.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.770][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-23 16:02:45.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-23 16:02:45.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-23 16:02:45.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-23 16:02:45.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.789][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-08-23 16:02:45.790][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-23 16:02:45.791][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-23 16:02:45.796][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:45.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:45.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.800][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:45.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:45.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-23 16:02:45.804][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:45.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-23 16:02:45.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-23 16:02:45.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-23 16:02:45.810][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-08-23 16:02:45.811][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-23 16:02:45.811][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-23 16:02:45.812][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-23 16:02:45.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-23 16:02:45.814][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-23 16:02:45.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-23 16:02:45.816][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-23 16:02:45.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1264 ]
>
> proc.time()
user system elapsed
58.512 1.241 62.426
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
Running ‘testthat.R’
OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
* installing *source* package ‘biodbChebi’ ... ** this is package ‘biodbChebi’ version ‘1.15.1’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)