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This page was generated on 2025-10-29 08:43 -0400 (Wed, 29 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 901
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Package 222/229HostnameOS / ArchINSTALLBUILDCHECK
VariantAnnotation 1.55.2  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2025-10-29 06:00 -0400 (Wed, 29 Oct 2025)
git_url: https://git.bioconductor.org/packages/VariantAnnotation
git_branch: devel
git_last_commit: af7ae49
git_last_commit_date: 2025-10-16 09:31:22 -0400 (Thu, 16 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for VariantAnnotation on teran2

To the developers/maintainers of the VariantAnnotation package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: VariantAnnotation
Version: 1.55.2
Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data VariantAnnotation
StartedAt: 2025-10-29 07:15:24 -0400 (Wed, 29 Oct 2025)
EndedAt: 2025-10-29 07:15:25 -0400 (Wed, 29 Oct 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data VariantAnnotation
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* checking for file ‘VariantAnnotation/DESCRIPTION’ ... OK
* preparing ‘VariantAnnotation’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
ERROR: dependencies ‘rtracklayer’, ‘BSgenome’, ‘GenomicFeatures’ are not available for package ‘VariantAnnotation’
Perhaps try a variation of:
install.packages(c('rtracklayer', 'BSgenome', 'GenomicFeatures'))
* removing ‘/tmp/RtmpcH647P/Rinst34fadcf4cf832/VariantAnnotation’
      -----------------------------------
ERROR: package installation failed