Back to Build/check report for BioC 3.22 experimental data |
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This page was generated on 2025-07-31 15:41 -0400 (Thu, 31 Jul 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4796 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 148/429 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
GenomicDistributionsData 1.17.0 (landing page) Kristyna Kupkova
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | |||||||
To the developers/maintainers of the GenomicDistributionsData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: GenomicDistributionsData |
Version: 1.17.0 |
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:GenomicDistributionsData.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings GenomicDistributionsData_1.17.0.tar.gz |
StartedAt: 2025-07-31 12:25:44 -0400 (Thu, 31 Jul 2025) |
EndedAt: 2025-07-31 12:30:34 -0400 (Thu, 31 Jul 2025) |
EllapsedTime: 290.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GenomicDistributionsData.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:GenomicDistributionsData.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings GenomicDistributionsData_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/GenomicDistributionsData.Rcheck’ * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.2 LTS * using session charset: UTF-8 * checking for file ‘GenomicDistributionsData/DESCRIPTION’ ... OK * this is package ‘GenomicDistributionsData’ version ‘1.17.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .travis.yml These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GenomicDistributionsData’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.22-data-experiment/meat/GenomicDistributionsData.Rcheck/00check.log’ for details.
GenomicDistributionsData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL GenomicDistributionsData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘GenomicDistributionsData’ ... ** this is package ‘GenomicDistributionsData’ version ‘1.17.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomicDistributionsData)
GenomicDistributionsData.Rcheck/GenomicDistributionsData-Ex.timings
name | user | system | elapsed | |
GenomicDistributionsData | 0 | 0 | 0 | |
TSS_hg19 | 2.140 | 0.071 | 2.446 | |
TSS_hg38 | 1.217 | 0.025 | 1.305 | |
TSS_mm10 | 2.176 | 0.283 | 2.559 | |
TSS_mm9 | 1.042 | 0.178 | 1.281 | |
buildChromSizes | 0 | 0 | 0 | |
buildGeneModels | 0 | 0 | 0 | |
buildOpenSignalMatrix | 0 | 0 | 0 | |
buildTSS | 0 | 0 | 0 | |
chromSizes_hg19 | 1.018 | 0.170 | 1.347 | |
chromSizes_hg38 | 0.962 | 0.252 | 1.450 | |
chromSizes_mm10 | 0.923 | 0.186 | 1.171 | |
chromSizes_mm9 | 0.970 | 0.129 | 1.162 | |
geneModels_hg19 | 1.300 | 0.199 | 1.602 | |
geneModels_hg38 | 1.131 | 0.074 | 1.271 | |
geneModels_mm10 | 1.142 | 0.082 | 1.286 | |
geneModels_mm9 | 1.416 | 0.114 | 1.592 | |
loadBSgenome | 0 | 0 | 0 | |
loadEnsDb | 0 | 0 | 0 | |
loadTxDb | 0 | 0 | 0 | |
openSignalMatrix_hg19 | 0 | 0 | 0 | |
openSignalMatrix_hg38 | 0 | 0 | 0 | |
openSignalMatrix_mm10 | 0 | 0 | 0 | |