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This page was generated on 2025-09-11 15:41 -0400 (Thu, 11 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4712
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 405/432HostnameOS / ArchINSTALLBUILDCHECK
TENxXeniumData 1.5.0  (landing page)
Matineh Rahmatbakhsh
Snapshot Date: 2025-09-11 07:30 -0400 (Thu, 11 Sep 2025)
git_url: https://git.bioconductor.org/packages/TENxXeniumData
git_branch: devel
git_last_commit: c19a2cd
git_last_commit_date: 2025-04-15 10:24:04 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for TENxXeniumData on nebbiolo2

To the developers/maintainers of the TENxXeniumData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: TENxXeniumData
Version: 1.5.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TENxXeniumData
StartedAt: 2025-09-11 11:53:33 -0400 (Thu, 11 Sep 2025)
EndedAt: 2025-09-11 11:54:49 -0400 (Thu, 11 Sep 2025)
EllapsedTime: 76.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TENxXeniumData
###
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* checking for file ‘TENxXeniumData/DESCRIPTION’ ... OK
* preparing ‘TENxXeniumData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘TENxXeniumData.Rmd’ using rmarkdown

Quitting from TENxXeniumData.Rmd:86-95 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `readRDS()`:
! error reading from connection
---
Backtrace:
    ▆
 1. ├─AnnotationHub::query(eh, "TENxXenium")
 2. └─AnnotationHub::query(eh, "TENxXenium")
 3.   └─AnnotationHub (local) .local(x, pattern, ...)
 4.     └─AnnotationHub:::.db_index_load(x)
 5.       └─base::readRDS(.db_index_file(x))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TENxXeniumData.Rmd' failed with diagnostics:
error reading from connection
--- failed re-building ‘TENxXeniumData.Rmd’

SUMMARY: processing the following file failed:
  ‘TENxXeniumData.Rmd’

Error: Vignette re-building failed.
Execution halted