Back to Workflows build report for BioC 3.23

This page was generated on 2025-10-31 10:55 -0400 (Fri, 31 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4474
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 26/28HostnameOS / ArchINSTALLBUILD
SingscoreAMLMutations 1.27.0  (landing page)
Dharmesh D. Bhuva
Snapshot Date: 2025-10-31 10:02 -0400 (Fri, 31 Oct 2025)
git_url: https://git.bioconductor.org/packages/SingscoreAMLMutations
git_branch: devel
git_last_commit: df15a5d
git_last_commit_date: 2025-10-29 09:47:22 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  

BUILD results for SingscoreAMLMutations on nebbiolo1

To the developers/maintainers of the SingscoreAMLMutations package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SingscoreAMLMutations
Version: 1.27.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SingscoreAMLMutations
StartedAt: 2025-10-31 10:10:59 -0400 (Fri, 31 Oct 2025)
EndedAt: 2025-10-31 10:15:31 -0400 (Fri, 31 Oct 2025)
EllapsedTime: 271.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SingscoreAMLMutations
###
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* checking for file ‘SingscoreAMLMutations/DESCRIPTION’ ... OK
* preparing ‘SingscoreAMLMutations’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘workflow_transcriptional_mut_sig.Rmd’ using rmarkdown

Quitting from workflow_transcriptional_mut_sig.Rmd:193-195 [gdc_prepare]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'workflow_transcriptional_mut_sig.Rmd' failed with diagnostics:
Can't select columns that don't exist.
✖ Column `disease_response` doesn't exist.
--- failed re-building ‘workflow_transcriptional_mut_sig.Rmd’

--- re-building ‘workflow_transcriptional_mut_sig_chinese.Rmd’ using rmarkdown

Quitting from workflow_transcriptional_mut_sig_chinese.Rmd:190-192 [gdc_prepare]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'workflow_transcriptional_mut_sig_chinese.Rmd' failed with diagnostics:
Can't select columns that don't exist.
✖ Column `disease_response` doesn't exist.
--- failed re-building ‘workflow_transcriptional_mut_sig_chinese.Rmd’

SUMMARY: processing the following files failed:
  ‘workflow_transcriptional_mut_sig.Rmd’
  ‘workflow_transcriptional_mut_sig_chinese.Rmd’

Error: Vignette re-building failed.
Execution halted