| Back to Workflows build report for BioC 3.22 |
This page was generated on 2025-06-20 16:30 -0400 (Fri, 20 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4562 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4400 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 1454 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 17/29 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| methylationArrayAnalysis 1.33.1 (landing page) Jovana Maksimovic
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK |  | |||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | |||||||||
|
To the developers/maintainers of the methylationArrayAnalysis package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: methylationArrayAnalysis |
| Version: 1.33.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis |
| StartedAt: 2025-06-20 13:14:58 -0400 (Fri, 20 Jun 2025) |
| EndedAt: 2025-06-20 13:19:45 -0400 (Fri, 20 Jun 2025) |
| EllapsedTime: 286.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis
###
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* checking for file ‘methylationArrayAnalysis/DESCRIPTION’ ... OK
* preparing ‘methylationArrayAnalysis’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘methylationArrayAnalysis.Rmd’ using rmarkdown
Quitting from methylationArrayAnalysis.Rmd:138-147 [readdata]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `validObject()`:
! invalid class "RGChannelSet" object: superclass "ExpData" not defined in the environment of the object's class
---
Backtrace:
▆
1. └─minfi::read.metharray.exp(targets = targets)
2. └─minfi::read.metharray(...)
3. └─minfi::RGChannelSet(Red = RedMean, Green = GreenMean)
4. └─methods::new(...)
5. ├─methods::initialize(value, ...)
6. └─methods::initialize(value, ...)
7. └─methods::validObject(.Object)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'methylationArrayAnalysis.Rmd' failed with diagnostics:
invalid class "RGChannelSet" object: superclass "ExpData" not defined in the environment of the object's class
--- failed re-building ‘methylationArrayAnalysis.Rmd’
SUMMARY: processing the following file failed:
‘methylationArrayAnalysis.Rmd’
Error: Vignette re-building failed.
Execution halted