Back to Books build report for BioC 3.22

This page was generated on 2026-03-23 14:30 -0400 (Mon, 23 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4893
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4687
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 8/11HostnameOS / ArchINSTALLBUILDCHECK
OSCA.multisample 1.18.0  (landing page)
Alan O'Callaghan
Snapshot Date: 2026-03-23 06:30 -0400 (Mon, 23 Mar 2026)
git_url: https://git.bioconductor.org/packages/OSCA.multisample
git_branch: RELEASE_3_22
git_last_commit: 21ecf56
git_last_commit_date: 2025-10-29 10:13:04 -0400 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.6 Monterey / x86_64  OK    ERROR  skipped


BUILD results for OSCA.multisample on merida1

To the developers/maintainers of the OSCA.multisample package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: OSCA.multisample
Version: 1.18.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OSCA.multisample
StartedAt: 2026-03-23 07:19:22 -0400 (Mon, 23 Mar 2026)
EndedAt: 2026-03-23 08:53:18 -0400 (Mon, 23 Mar 2026)
EllapsedTime: 5635.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OSCA.multisample
###
##############################################################################
##############################################################################


* checking for file ‘OSCA.multisample/DESCRIPTION’ ... OK
* preparing ‘OSCA.multisample’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘stub.Rmd’ using rmarkdown
[WARNING] This document format requires a nonempty <title> element.
  Please specify either 'title' or 'pagetitle' in the metadata,
  e.g. by using --metadata pagetitle="..." on the command line.
  Falling back to 'stub.knit'
--- finished re-building ‘stub.Rmd’

"/Library/Frameworks/R.framework/Resources/bin/R" -e "work.dir <- rebook::bookCache('OSCA.multisample'); handle <- rebook::preCompileBook('../inst/book', work.dir=work.dir, desc='../DESCRIPTION'); old.dir <- setwd(work.dir); bookdown::render_book('index.Rmd'); setwd(old.dir); rebook::postCompileBook(work.dir=work.dir, final.dir='../inst/doc/book', handle=handle)"

R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
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Platform: x86_64-apple-darwin20

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Type 'license()' or 'licence()' for distribution details.

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> work.dir <- rebook::bookCache('OSCA.multisample'); handle <- rebook::preCompileBook('../inst/book', work.dir=work.dir, desc='../DESCRIPTION'); old.dir <- setwd(work.dir); bookdown::render_book('index.Rmd'); setwd(old.dir); rebook::postCompileBook(work.dir=work.dir, final.dir='../inst/doc/book', handle=handle)
# 
# 
# processing file: merged-hsc.Rmd
# 1/44                        
# 2/44 [unref-setup]          
# 3/44                        
# 4/44 [unnamed-chunk-1]      
# Error in lazyLoadDBinsertVariable(vars[i], from, datafile, ascii, compress,  : 
#   write failed
# Calls: <Anonymous> ... <Anonymous> -> <Anonymous> -> lazyLoadDBinsertVariable
# Error in file(con, "w") : cannot open the connection
# Calls: <Anonymous> ... <Anonymous> -> handler -> write_utf8 -> writeLines -> file
# In addition: Warning message:
# In file(con, "w") :
#   cannot open file 'merged-hsc.knit.md': No space left on device
# Execution halted

Error in compileChapter(path) : 
  failed to compile '~/Library/Caches/rebook/OSCA.multisample/1.18.0/merged-hsc.Rmd'
Calls: <Anonymous> ... .precompile_book -> .locked_compile_chapter -> compileChapter
Execution halted
make: *** [compiled] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) : 
  running 'make' failed
Execution halted