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This page was generated on 2025-12-30 15:41 -0500 (Tue, 30 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4883
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 414/435HostnameOS / ArchINSTALLBUILDCHECK
TMExplorer 1.20.0  (landing page)
Erik Christensen
Snapshot Date: 2025-12-30 07:30 -0500 (Tue, 30 Dec 2025)
git_url: https://git.bioconductor.org/packages/TMExplorer
git_branch: RELEASE_3_22
git_last_commit: e6877cc
git_last_commit_date: 2025-10-29 10:02:53 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for TMExplorer on nebbiolo2

To the developers/maintainers of the TMExplorer package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: TMExplorer
Version: 1.20.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TMExplorer
StartedAt: 2025-12-30 11:47:37 -0500 (Tue, 30 Dec 2025)
EndedAt: 2025-12-30 11:48:15 -0500 (Tue, 30 Dec 2025)
EllapsedTime: 38.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TMExplorer
###
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* checking for file ‘TMExplorer/DESCRIPTION’ ... OK
* preparing ‘TMExplorer’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘TMExplorer.Rmd’ using rmarkdown

Quitting from TMExplorer.Rmd:89-91 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.util_download()`:
! bfcadd() failed; see warnings()
---
Backtrace:
    ▆
 1. └─TMExplorer::queryTME(geo_accession = "GSE81861")
 2.   └─TMExplorer:::fetchTME(df, row, sparse)
 3.     └─TMExplorer:::downloadTME(df, row, "expression_link", bfc)
 4.       ├─BiocFileCache::bfcadd(...)
 5.       └─BiocFileCache::bfcadd(...)
 6.         └─BiocFileCache:::.util_download(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TMExplorer.Rmd' failed with diagnostics:
bfcadd() failed; see warnings()
--- failed re-building ‘TMExplorer.Rmd’

SUMMARY: processing the following file failed:
  ‘TMExplorer.Rmd’

Error: Vignette re-building failed.
Execution halted