Back to Workflows build report for BioC 3.22

This page was generated on 2026-03-03 16:30 -0500 (Tue, 03 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4892
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4682
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 17/29HostnameOS / ArchINSTALLBUILD
methylationArrayAnalysis 1.34.2  (landing page)
Jovana Maksimovic
Snapshot Date: 2026-03-03 12:45 -0500 (Tue, 03 Mar 2026)
git_url: https://git.bioconductor.org/packages/methylationArrayAnalysis
git_branch: RELEASE_3_22
git_last_commit: c391189
git_last_commit_date: 2026-02-10 02:10:04 -0500 (Tue, 10 Feb 2026)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.6 Monterey / x86_64  OK    ERROR  

BUILD results for methylationArrayAnalysis on merida1

To the developers/maintainers of the methylationArrayAnalysis package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: methylationArrayAnalysis
Version: 1.34.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis
StartedAt: 2026-03-03 13:23:49 -0500 (Tue, 03 Mar 2026)
EndedAt: 2026-03-03 13:47:22 -0500 (Tue, 03 Mar 2026)
EllapsedTime: 1413.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis
###
##############################################################################
##############################################################################


* checking for file ‘methylationArrayAnalysis/DESCRIPTION’ ... OK
* preparing ‘methylationArrayAnalysis’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘methylationArrayAnalysis.Rmd’ using rmarkdown
2026-03-03 13:40:10.203 R[90378:418867779] XType: com.apple.fonts is not accessible.
2026-03-03 13:40:10.228 R[90378:418867779] XType: XTFontStaticRegistry is enabled.

Quitting from methylationArrayAnalysis.Rmd:459-464 [figure10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_504>
Error in `req_perform()`:
! HTTP 504 Gateway Timeout.
---
Backtrace:
    ▆
 1. └─DMRcate::DMR.plot(...)
 2.   ├─base::suppressWarnings(...)
 3.   │ └─base::withCallingHandlers(...)
 4.   └─biomaRt::useEnsembl(...)
 5.     └─biomaRt:::.listMarts(...)
 6.       └─biomaRt:::bmRequest(...)
 7.         └─httr2::req_perform(request)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'methylationArrayAnalysis.Rmd' failed with diagnostics:
HTTP 504 Gateway Timeout.
--- failed re-building ‘methylationArrayAnalysis.Rmd’

SUMMARY: processing the following file failed:
  ‘methylationArrayAnalysis.Rmd’

Error: Vignette re-building failed.
Execution halted