To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Biobase")

In most cases, you don't need to download the package archive at all.

Biobase

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see Biobase.

Biobase: Base functions for Bioconductor

Bioconductor version: 2.8

Functions that are needed by many other packages or which replace R functions.

Author: R. Gentleman, V. Carey, M. Morgan, S. Falcon

Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>

Citation (from within R, enter citation("Biobase")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Biobase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Biobase")

PDF		BiobaseDevelopment.pdf
PDF		Bioconductor.pdf
PDF		esApply.pdf
PDF		ExpressionSetIntroduction.pdf
PDF		HowTo.pdf
PDF		Qviews.pdf
PDF		Reference Manual

Details

biocViews	Bioinformatics, Infrastructure, Software
Version	2.12.2
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 11 years)
License	Artistic-2.0
Depends	R (>= 2.7.0), methods, utils
Imports
LinkingTo
Suggests	tools, tkWidgets, ALL
SystemRequirements
Enhances
URL
Depends On Me	a4Base, a4Core, ACME, affy, affycomp, affycompData, affyContam, affycoretools, affylmGUI, affyPLM, affyQCReport, Agi4x44PreProcess, AgiMicroRna, ALL, altcdfenvs, annaffy, AnnotationDbi, ArrayExpress, arrayMvout, ArrayTools, beadarray, beadarraySNP, bgx, BicARE, BiocCaseStudies, bioDist, BioMVCClass, BioNet, bladderbatch, Category, CCl4, cellHTS, cellHTS2, ceuhm3, CGHbase, CGHcall, CGHregions, charm, cheung2010, clippda, CLL, clusterStab, CMA, cn.farms, codelink, colonCA, convert, copa, crlmm, davidTiling, ddCt, DESeq, DFP, DLBCL, dressCheck, dualKS, dyebias, EBarrays, edd, eisa, encoDnaseI, ExiMiR, factDesign, fibroEset, flowClust, flowCore, frma, gaga, gaschYHS, GeneAnswers, GeneMeta, geneplotter, geneRecommender, GeneRegionScan, GeneSelectMMD, GeneSelector, GeneSpring, GeneTraffic, genoset, GEOquery, GGBase, GGdata, GGtools, golubEsets, goProfiles, GOstats, GSEABase, GSEAlm, GSVAdata, harbChIP, HELP, hmyriB36, hopach, HTqPCR, humanStemCell, idiogram, iterativeBMA, Iyer517, kidpack, leeBamViews, LMGene, lumi, lumiBarnes, lungExpression, LVSmiRNA, macat, maDB, MAQCsubset, MAQCsubsetAFX, MAQCsubsetILM, maSigPro, MergeMaid, methylumi, Mfuzz, MiChip, MLInterfaces, MSnbase, Mulcom, multtest, mvoutData, Neve2006, oligoClasses, oneChannelGUI, ontoTools, OrderedList, OTUbase, OutlierD, PAnnBuilder, panp, pcaMethods, pcot2, pdInfoBuilder, pdmclass, PGSEA, phenoTest, plgem, PLPE, prada, ProData, PROMISE, puma, pumadata, qpcrNorm, R453Plus1Toolbox, RbcBook1, rbsurv, reb, RefPlus, Resourcerer, rHVDM, Ringo, RMAGEML, Rmagpie, rMAT, RNAinteract, rnaSeqMap, RpsiXML, RTCA, RTools4TB, Rtreemix, safe, siggenes, simpleaffy, SNPchip, SpeCond, SpikeInSubset, spkTools, splicegear, TDARACNE, tigre, tilingArray, topGO, tspair, twilight, vsn, webbioc, XDE, yeastCC
Imports Me	ABarray, aCGH, adSplit, affy, affyQCReport, AgiMicroRna, annotate, AnnotationDbi, annotationTools, ArrayExpressHTS, arrayQualityMetrics, ArrayTools, attract, betr, biocViews, BioSeqClass, Category, CGHnormaliter, charm, ChromHeatMap, ConsensusClusterPlus, cycle, EBarrays, ecolitk, ExiMiR, farms, flowCore, flowFlowJo, flowFP, flowMeans, flowStats, flowUtils, flowViz, frma, frmaTools, gcrma, genefilter, GeneMeta, geneplotter, geneRecommender, GeneRegionScan, GeneSelectMMD, GeneSpring, GeneTraffic, genomeIntervals, genoset, GEOsubmission, girafe, globaltest, GOstats, GSEABase, GSRI, GSVA, Harshlight, HEM, hopach, HTqPCR, iFlow, imageHTS, lapmix, LiquidAssociation, lumi, maanova, makecdfenv, makePlatformDesign, maSigPro, mBPCR, MCRestimate, metaArray, methylumi, MiChip, MiPP, multiscan, oligo, OrderedList, PAnnBuilder, panp, PCpheno, plateCore, plier, ppiStats, prada, PROMISE, puma, pvac, qpgraph, R453Plus1Toolbox, rflowcyt, Rmagpie, rMAT, Rtreemix, safe, SAGx, ShortRead, simpleaffy, SLGI, SNPchip, spkTools, splicegear, TEQC, tigre, timecourse, topGO, twilight, webbioc, XDE, xmapcore
Suggests Me	annotate, betr, BiocCaseStudies, biocViews, breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX, BSgenome, Category, ccTutorial, dyebiasexamples, estrogen, farms, genefilter, geneplotter, GlobalAncova, globaltest, hexbin, les, nem, pkgDepTools, ROC, survcomp, tkWidgets, vbmp, widgetTools, yeastExpData, yeastRNASeq
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	Biobase_2.12.2.tar.gz
Windows Binary	Biobase_2.12.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/Biobase/tree/release-2.8
Package Short Url	http://bioconductor.org/packages/Biobase/
Package Downloads Report	Download Stats