- Home
- Bioconductor 2.8
- Software Packages
- globaltest
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("globaltest")
In most cases, you don't need to download the package archive at all.
globaltest
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see globaltest.
Testing groups of covariates/features for association with a response variable, with applications to gene set testing
Bioconductor version: 2.8
The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.
Author: Jelle Goeman <j.j.goeman at lumc.nl> and Jan Oosting <j.oosting at lumc.nl>
Maintainer: Jelle Goeman <j.j.goeman at lumc.nl>
Citation (from within R,
enter citation("globaltest")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("globaltest")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("globaltest")
| GlobalTest.pdf | ||
| GlobalTest_deprecated.pdf | ||
| Reference Manual |
Details
| biocViews | Bioinformatics, DifferentialExpression, GO, Microarray, OneChannel, Pathways, Software |
| Version | 5.6.1 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 11 years) |
| License | GPL (>= 2) |
| Depends | methods |
| Imports | Biobase(>= 2.5.5), survival, AnnotationDbi, annotate, multtest, graphics |
| LinkingTo | |
| Suggests | vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db, lungExpression, org.Hs.eg.db, annotate, Biobase(>= 2.5.5), survival, GSEABase, mboost, penalized |
| SystemRequirements | |
| Enhances | |
| URL | http://www.msbi.nl/goeman |
| Depends On Me | GlobalAncova |
| Imports Me | SIM |
| Suggests Me | topGO |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | globaltest_5.6.1.tar.gz |
| Windows Binary | globaltest_5.6.1.zip |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/globaltest/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/globaltest/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
