enrichplot
This is the development version of enrichplot; for the stable release version, see enrichplot.
Visualization of Functional Enrichment Result
Bioconductor version: Development (3.23)
The 'enrichplot' package provides visualization methods for interpreting functional enrichment results from ORA or GSEA analyses. It is designed to work with the 'clusterProfiler' ecosystem and builds on 'ggplot2' for flexible and extensible graphics.
Author: Guangchuang Yu [aut, cre]
, Chun-Hui Gao [ctb]
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
citation("enrichplot")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("enrichplot")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("enrichplot")| enrichplot.html | HTML |
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Annotation, GO, GeneSetEnrichment, KEGG, Pathways, Software, Visualization |
| Version | 1.31.5 |
| In Bioconductor since | BioC 3.7 (R-3.5) (8 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.2.0) |
| Imports | aplot (>= 0.2.1), DOSE, dplyr, enrichit, ggfun (>= 0.1.7), ggnewscale, ggplot2 (>= 3.5.0), ggrepel (>= 0.9.0), ggtangle (>= 0.0.9), ggtree, GOSemSim(>= 2.37.2), graphics, grid, igraph, methods, purrr, RColorBrewer, reshape2, rlang, scatterpie, stats, tidydr, utils, yulab.utils (>= 0.2.2) |
| System Requirements | |
| URL | https://yulab-smu.top/contribution-knowledge-mining/ |
| Bug Reports | https://github.com/GuangchuangYu/enrichplot/issues |
See More
| Suggests | AnnotationDbi, clusterProfiler, europepmc, ggarchery, ggforce, ggHoriPlot, ggplotify, ggridges, ggstar, ggtreeExtra, ggupset, glue, grDevices, gridExtra, gson, org.Hs.eg.db, quarto, scales, tibble, tidyr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | carnation, CBNplot, ChIPseeker, clusterProfiler, damidBind, debrowser, enrichViewNet, epiSeeker, famat, goatea, MicrobiomeProfiler, ReactomePA, RFLOMICS, TDbasedUFEadv |
| Suggests Me | GeoTcgaData, mastR, methylGSA, scFeatures, scGraphVerse, tidybulk, easyEWAS, ggpicrust2, ivolcano, ReporterScore, SCpubr |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | enrichplot_1.31.5.tar.gz |
| Windows Binary (x86_64) | enrichplot_1.31.2.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | enrichplot_1.31.1.tgz |
| macOS Binary (big-sur-arm64) | enrichplot_1.31.4.tgz |
| macOS Binary (sonoma-arm64) | enrichplot_1.31.5.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/enrichplot |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/enrichplot |
| Bioc Package Browser | https://code.bioconductor.org/browse/enrichplot/ |
| Package Short Url | https://bioconductor.org/packages/enrichplot/ |
| Package Downloads Report | Download Stats |