Package: twilight

Version: 1.11.1

Command: E:\biocbld\2.0d\R\bin\R.exe CMD build twilight

RetCode: 1

Time: 28.5 seconds

Status: ERROR

PackageFile: None

* checking for file 'twilight/DESCRIPTION' ... OK
* preparing 'twilight':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in E:/biocbld/2.0d/tmpdir/Rinst427217550


---------- Making package twilight ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making confidence.line.d from confidence.line.c
making correlation.d from correlation.c
making kstest.d from kstest.c
making sep.d from sep.c
making twosample.perm.d from twosample.perm.c
making twosample.single.d from twosample.single.c
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c confidence.line.c -o confidence.line.o
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c correlation.c -o correlation.o
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c kstest.c -o kstest.o
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c sep.c -o sep.o
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c twosample.perm.c -o twosample.perm.o
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c twosample.single.c -o twosample.single.o
windres --include-dir e:/biocbld/2.0d/R/include  -i twilight_res.rc -o twilight_res.o
gcc  -shared -s  -o twilight.dll twilight.def confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o twilight_res.o  -Le:/biocbld/2.0d/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'twilight'
     Formats: text html latex example chm 
  exfdr                             text    html    latex           chm
  expval                            text    html    latex           chm
  plot.twilight                     text    html    latex   example chm
  print.twilight                    text    html    latex   example chm
  twilight                          text    html    latex   example chm
  twilight.combi                    text    html    latex   example chm
  twilight.filtering                text    html    latex   example chm
  twilight.getlambda                text    html    latex           chm
  twilight.getmatrix                text    html    latex           chm
  twilight.permute.pair             text    html    latex           chm
  twilight.permute.unpair           text    html    latex           chm
  twilight.pval                     text    html    latex   example chm
  twilight.teststat                 text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\2.0d\Rpacks\twilight\chm\twilight.chm





Compile time: 0 minutes, 0 seconds

14	Topics

46	Local links

11	Internet links

1	Graphic





Created e:\biocbld\2.0d\Rpacks\twilight\chm\twilight.chm, 37,063 bytes

Compression decreased file by 23,402 bytes.

  preparing package twilight for lazy loading
Loading required package: splines
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

  adding MD5 sums

* DONE (twilight)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Warning messages:
1: The exprSet class is deprecated, use ExpressionSet instead 
2: The exprSet class is deprecated, use ExpressionSet instead 
3: The exprSet class is deprecated, use ExpressionSet instead 
4: The exprSet class is deprecated, use ExpressionSet instead 
5: The exprSet class is deprecated, use ExpressionSet instead 
6: The exprSet class is deprecated, use ExpressionSet instead 
7: The exprSet class is deprecated, use ExpressionSet instead 
8: The exprSet class is deprecated, use ExpressionSet instead 
9: The exprSet class is deprecated, use ExpressionSet instead 
10: The exprSet class is deprecated, use ExpressionSet instead 

Error:  chunk 10 
Error in system(paste(gsexe, "-help"), intern = TRUE, invisible = TRUE) : 
	gswin32c.exe not found
Error in buildVignettes(dir = ".") : Error:  chunk 10 
Error in system(paste(gsexe, "-help"), intern = TRUE, invisible = TRUE) : 
	gswin32c.exe not found
Execution halted