Koki Tsuyuzaki
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/DelayedTensor |
| git_branch: master |
| git_last_commit: 428e03d |
| git_last_commit_date: 2021-10-26 13:10:44 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:20 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the DelayedTensor package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DelayedTensor.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 487/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DelayedTensor 1.1.0 (landing page) Koki Tsuyuzaki
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: DelayedTensor |
| Version: 1.1.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:DelayedTensor.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings DelayedTensor_1.1.0.tar.gz |
| StartedAt: 2022-03-17 18:54:13 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:00:21 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 367.4 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: DelayedTensor.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:DelayedTensor.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings DelayedTensor_1.1.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/DelayedTensor.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DelayedTensor/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DelayedTensor' version '1.1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DelayedTensor' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
human_mid_brain.rda 677Kb 442Kb xz
mouse_mid_brain.rda 761Kb 513Kb xz
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
cp 103.87 14.64 151.33
tucker 18.09 2.72 23.65
mpca 6.49 0.81 9.69
pvd 4.38 0.56 5.59
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
'D:/biocbuild/bbs-3.15-bioc/meat/DelayedTensor.Rcheck/00check.log'
for details.
DelayedTensor.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL DelayedTensor
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'DelayedTensor' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'kronecker' in package 'DelayedTensor'
Creating a new generic function for 'diag' in package 'DelayedTensor'
Creating a new generic function for 'diag<-' in package 'DelayedTensor'
** help
*** installing help indices
converting help for package 'DelayedTensor'
finding HTML links ... done
DelayedDiagonalArray html
DelayedTensor-package html
cbind_list html
cp html
cs_fold html
cs_unfold html
diag html
einsum html
fnorm html
fold html
getSparse html
getVerbose html
hadamard html
hadamard_list html
hosvd html
human_mid_brain html
innerProd html
k_fold html
k_unfold html
khatri_rao html
khatri_rao_list html
kronecker html
kronecker_list html
list_rep html
matvec html
modeMean html
modeSum html
modebind_list html
mouse_mid_brain html
mpca html
outerProd html
pvd html
rbind_list html
rs_fold html
rs_unfold html
setSparse html
setVerbose html
ttl html
ttm html
tucker html
unfold html
unmatvec html
vec html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DelayedTensor)
Making 'packages.html' ... done
DelayedTensor.Rcheck/tests/testthat.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("DelayedArray")
Loading required package: stats4
Loading required package: Matrix
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:Matrix':
expand, unname
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Attaching package: 'DelayedArray'
The following objects are masked from 'package:base':
aperm, apply, rowsum, scale, sweep
> # library("HDF5Array") # comment out
> # library("BiocSingular") # comment out
> library("rTensor")
Attaching package: 'rTensor'
The following object is masked from 'package:S4Vectors':
fold
> library("DelayedRandomArray")
> # library("irlba") # comment out
> # library("Matrix") # comment out
> library("einsum")
> library("DelayedTensor")
Attaching package: 'DelayedTensor'
The following object is masked from 'package:einsum':
einsum
The following objects are masked from 'package:rTensor':
cp, cs_fold, cs_unfold, fnorm, fold, hadamard_list, hosvd,
innerProd, k_fold, k_unfold, khatri_rao, khatri_rao_list,
kronecker_list, matvec, modeMean, modeSum, mpca, pvd, rs_fold,
rs_unfold, ttl, ttm, tucker, unfold, unmatvec, vec
The following object is masked from 'package:S4Vectors':
fold
The following objects are masked from 'package:Matrix':
diag, diag<-, kronecker
The following object is masked from 'package:methods':
kronecker
The following objects are masked from 'package:base':
diag, diag<-, kronecker
> library("reticulate")
> library("testthat")
> library("HDF5Array")
Loading required package: rhdf5
Attaching package: 'HDF5Array'
The following object is masked from 'package:rhdf5':
h5ls
>
> # Setting
> options(testthat.use_colours = FALSE)
> options(delayedtensor.sparse = FALSE)
> options(delayedtensor.verbose = FALSE)
> setHDF5DumpCompressionLevel(level=9L)
> source("testthat/test_Einsum_objects.R")
>
> # source("../R/Decomp.R") # comment out
> # source("../R/Einsum.R") # comment out
> # source("../R/Generics.R") # comment out
> # source("../R/Global-settings.R") # comment out
> # source("../R/Misc.R") # comment out
> # source("../R/SVD.R") # comment out
> # source("../R/Utils.R") # comment out
> # source("../R/zzz.R") # comment out
>
> # for(size in c(1E+9,1E+8,1E+7,1E+6,1E+5,1E+4,1E+3,1E+2,50,20:1)){ # comment out
> # setAutoBlockSize(size=size) # comment out
> # getAutoBlockSize() # comment out
> test_file("testthat/test_Generics.R")
== Testing test_Generics.R =====================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 11 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 19 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 20 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 21 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 23 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 25 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 26 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 27 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 28 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 28 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 30 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 30 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 31 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 31 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 32 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 32 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 35 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 35 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 36 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 36 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 37 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 37 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 38 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 38 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 39 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 39 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 40 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 40 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 41 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 41 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 42 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 42 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 43 ] Done!
> test_file("testthat/test_Misc.R")
== Testing test_Misc.R =========================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 11 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ] Done!
> # test_file("testthat/test_SVD.R") # comment out
> test_file("testthat/test_4thorder.R")
== Testing test_4thorder.R =====================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ][1] "unfold"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ][1] "modeSum"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 11 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ][1] "innerProd"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ][1] "vec"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ][1] "fold"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 19 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 20 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 21 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ][1] "diag"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 23 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 23 ][1] "diag"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ][1] "DelayedDiagonalArray"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 25 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 26 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 27 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 28 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 30 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 31 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 32 ] Done!
> test_file("testthat/test_Einsum.R")
== Testing test_Einsum.R =======================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 11 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 19 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 20 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 21 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 23 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 25 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 26 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 27 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 28 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 30 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 31 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 32 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 35 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 36 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 37 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 38 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 39 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 40 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 41 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 42 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 43 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 44 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 45 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 46 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 47 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 48 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 49 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 50 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 51 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 52 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 53 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 54 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 55 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 56 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 57 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 58 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 59 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 60 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 61 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 62 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 63 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 64 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 65 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 66 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 67 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 68 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 69 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 70 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 71 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 72 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 73 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 74 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 75 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 76 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 77 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 78 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 79 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 80 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 81 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 81 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 82 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 83 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 84 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 84 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 85 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 86 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 87 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 88 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 89 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 90 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 91 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 92 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 93 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 94 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 95 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 96 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 97 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 98 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 99 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 100 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 101 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 102 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 103 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 104 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 105 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 106 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 107 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 108 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 109 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 110 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 111 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 112 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 113 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 114 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 115 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 116 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 117 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 118 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 119 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 120 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 121 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 122 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 123 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 124 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 125 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 126 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 127 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 128 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 129 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 130 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 131 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 132 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 133 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 134 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 135 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 136 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 137 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 138 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 139 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 140 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 141 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 142 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 143 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 144 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 145 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 146 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 147 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 148 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 149 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 150 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 151 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 152 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 153 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 154 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 155 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 156 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 157 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 158 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 159 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 160 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 160 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 161 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 162 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 163 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 164 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 165 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 166 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 167 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 168 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 169 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 170 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 171 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 172 ] Done!
> # gc();gc() # comment out
> # } # comment out
>
> # setAutoBlockSize(size=1E+8)
> # test_file("testthat/test_Decomp.R")
> # test_file("testthat/test_Einsum_Py.R") # comment out
> # source("testthat/test_Verbose.R")
> # source("testthat/test_Sparse.R")
>
> # Profiling
> # source("testthat/test_SuperBig.R") # comment out
>
> proc.time()
user system elapsed
40.01 5.29 51.21
DelayedTensor.Rcheck/DelayedTensor-Ex.timings
| name | user | system | elapsed | |
| DelayedDiagonalArray | 0.05 | 0.00 | 0.05 | |
| DelayedTensor-package | 0 | 0 | 0 | |
| cbind_list | 0.53 | 0.06 | 0.61 | |
| cp | 103.87 | 14.64 | 151.33 | |
| cs_fold | 0.37 | 0.04 | 0.42 | |
| cs_unfold | 0.22 | 0.04 | 0.27 | |
| diag | 0.34 | 0.05 | 0.41 | |
| einsum | 0.73 | 0.16 | 1.01 | |
| fnorm | 0.11 | 0.01 | 0.13 | |
| fold | 0.39 | 0.11 | 0.58 | |
| getSparse | 0 | 0 | 0 | |
| getVerbose | 0 | 0 | 0 | |
| hadamard | 0.20 | 0.02 | 0.22 | |
| hadamard_list | 0.28 | 0.00 | 0.28 | |
| hosvd | 2.89 | 0.41 | 3.92 | |
| human_mid_brain | 0 | 0 | 0 | |
| innerProd | 0.05 | 0.03 | 0.08 | |
| k_fold | 0.34 | 0.05 | 0.47 | |
| k_unfold | 0.23 | 0.01 | 0.27 | |
| khatri_rao | 0.15 | 0.02 | 0.17 | |
| khatri_rao_list | 0.14 | 0.04 | 0.20 | |
| kronecker | 0.09 | 0.00 | 0.10 | |
| kronecker_list | 0.19 | 0.00 | 0.18 | |
| list_rep | 0.12 | 0.02 | 0.14 | |
| matvec | 0.17 | 0.06 | 0.28 | |
| modeMean | 0.82 | 0.16 | 1.35 | |
| modeSum | 0.71 | 0.06 | 0.89 | |
| modebind_list | 0.78 | 0.03 | 0.90 | |
| mouse_mid_brain | 0 | 0 | 0 | |
| mpca | 6.49 | 0.81 | 9.69 | |
| outerProd | 0.23 | 0.02 | 0.30 | |
| pvd | 4.38 | 0.56 | 5.59 | |
| rbind_list | 0.37 | 0.05 | 0.47 | |
| rs_fold | 0.42 | 0.09 | 0.56 | |
| rs_unfold | 0.22 | 0.08 | 0.33 | |
| setSparse | 0 | 0 | 0 | |
| setVerbose | 0 | 0 | 0 | |
| ttl | 0.94 | 0.06 | 1.09 | |
| ttm | 0.56 | 0.10 | 0.75 | |
| tucker | 18.09 | 2.72 | 23.65 | |
| unfold | 0.28 | 0.01 | 0.33 | |
| unmatvec | 0.39 | 0.06 | 0.48 | |
| vec | 0.22 | 0.04 | 0.27 | |