Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-07-22 12:45 -0400 (Mon, 22 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4688 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4455 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4404 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 966/2248 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.11.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.11.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.11.0.tar.gz |
StartedAt: 2024-07-21 22:24:35 -0400 (Sun, 21 Jul 2024) |
EndedAt: 2024-07-21 22:26:54 -0400 (Sun, 21 Jul 2024) |
EllapsedTime: 138.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/HPiP.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.7 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.11.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 18.657 0.611 19.279 FSmethod 17.809 0.609 18.430 corr_plot 17.730 0.551 18.288 pred_ensembel 6.032 0.505 4.537 enrichfindP 0.168 0.029 9.134 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 97.170496 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 102.470440 final value 94.467391 converged Fitting Repeat 3 # weights: 103 initial value 99.802138 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 99.402912 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 101.996067 iter 10 value 94.455592 final value 94.455555 converged Fitting Repeat 1 # weights: 305 initial value 97.725676 iter 10 value 93.969902 final value 93.918130 converged Fitting Repeat 2 # weights: 305 initial value 99.226110 final value 94.276324 converged Fitting Repeat 3 # weights: 305 initial value 97.068945 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 107.208084 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 100.028278 iter 10 value 91.890908 final value 91.726410 converged Fitting Repeat 1 # weights: 507 initial value 99.912758 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 101.081498 final value 94.467391 converged Fitting Repeat 3 # weights: 507 initial value 97.621577 final value 94.467391 converged Fitting Repeat 4 # weights: 507 initial value 101.608720 final value 92.579683 converged Fitting Repeat 5 # weights: 507 initial value 126.197830 iter 10 value 94.341971 final value 94.337838 converged Fitting Repeat 1 # weights: 103 initial value 98.175422 iter 10 value 94.490920 iter 20 value 94.127821 iter 30 value 87.809751 iter 40 value 86.028728 iter 50 value 85.766461 iter 60 value 85.459409 iter 70 value 85.173688 iter 80 value 84.988845 iter 90 value 84.949485 final value 84.944884 converged Fitting Repeat 2 # weights: 103 initial value 97.458171 iter 10 value 94.480680 iter 20 value 87.108705 iter 30 value 86.812905 iter 40 value 86.594753 iter 50 value 86.552920 iter 60 value 86.427802 iter 70 value 85.511310 iter 80 value 84.857108 iter 90 value 84.707677 final value 84.693715 converged Fitting Repeat 3 # weights: 103 initial value 108.397870 iter 10 value 94.404210 iter 20 value 88.090405 iter 30 value 87.758954 iter 40 value 87.319194 iter 50 value 86.216653 iter 60 value 84.986086 iter 70 value 84.901085 iter 80 value 84.899707 final value 84.899702 converged Fitting Repeat 4 # weights: 103 initial value 104.061445 iter 10 value 94.488668 iter 20 value 94.145285 iter 30 value 92.674985 iter 40 value 88.533788 iter 50 value 88.113003 iter 60 value 87.738574 iter 70 value 87.632159 iter 80 value 87.488940 iter 90 value 85.404938 iter 100 value 84.702143 final value 84.702143 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 104.386103 iter 10 value 94.495400 iter 20 value 94.440848 iter 30 value 90.698916 iter 40 value 87.215893 iter 50 value 86.754951 iter 60 value 86.624932 iter 70 value 85.435051 iter 80 value 84.780884 iter 90 value 84.701344 final value 84.693714 converged Fitting Repeat 1 # weights: 305 initial value 119.758274 iter 10 value 94.528463 iter 20 value 90.369169 iter 30 value 88.762625 iter 40 value 88.455078 iter 50 value 88.070959 iter 60 value 85.736377 iter 70 value 84.721776 iter 80 value 84.447338 iter 90 value 84.398664 iter 100 value 84.254300 final value 84.254300 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 108.324391 iter 10 value 94.888647 iter 20 value 94.511250 iter 30 value 90.740980 iter 40 value 89.823334 iter 50 value 87.954638 iter 60 value 87.491387 iter 70 value 87.399390 iter 80 value 86.013841 iter 90 value 83.741365 iter 100 value 83.064409 final value 83.064409 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 103.736604 iter 10 value 94.464985 iter 20 value 92.878773 iter 30 value 89.304184 iter 40 value 88.104237 iter 50 value 86.964546 iter 60 value 85.613757 iter 70 value 83.607796 iter 80 value 82.055965 iter 90 value 81.870755 iter 100 value 81.631260 final value 81.631260 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 108.631489 iter 10 value 94.497130 iter 20 value 92.313232 iter 30 value 87.655380 iter 40 value 87.160516 iter 50 value 85.096616 iter 60 value 83.329402 iter 70 value 83.070109 iter 80 value 82.930800 iter 90 value 82.584738 iter 100 value 82.408415 final value 82.408415 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 109.331928 iter 10 value 94.542917 iter 20 value 93.426722 iter 30 value 86.687545 iter 40 value 85.528471 iter 50 value 85.138842 iter 60 value 84.918701 iter 70 value 84.586374 iter 80 value 84.289558 iter 90 value 83.779393 iter 100 value 83.617354 final value 83.617354 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 106.027016 iter 10 value 91.174457 iter 20 value 86.818970 iter 30 value 84.771184 iter 40 value 84.654512 iter 50 value 84.595868 iter 60 value 84.435412 iter 70 value 84.342194 iter 80 value 84.251590 iter 90 value 83.801115 iter 100 value 83.153525 final value 83.153525 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 111.412674 iter 10 value 94.422073 iter 20 value 92.361238 iter 30 value 85.525847 iter 40 value 83.479012 iter 50 value 82.911527 iter 60 value 82.558268 iter 70 value 81.358927 iter 80 value 80.888761 iter 90 value 80.815508 iter 100 value 80.727975 final value 80.727975 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 106.015999 iter 10 value 94.393350 iter 20 value 87.592339 iter 30 value 87.252694 iter 40 value 86.294903 iter 50 value 85.350770 iter 60 value 85.045521 iter 70 value 83.417009 iter 80 value 83.176403 iter 90 value 82.302440 iter 100 value 81.847821 final value 81.847821 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 108.997516 iter 10 value 94.813122 iter 20 value 89.720531 iter 30 value 88.369713 iter 40 value 87.732076 iter 50 value 84.855300 iter 60 value 82.938503 iter 70 value 81.181860 iter 80 value 81.006956 iter 90 value 80.957641 iter 100 value 80.580480 final value 80.580480 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 105.378547 iter 10 value 94.441925 iter 20 value 90.414594 iter 30 value 88.611937 iter 40 value 87.740413 iter 50 value 84.474587 iter 60 value 84.012969 iter 70 value 83.368874 iter 80 value 83.213434 iter 90 value 82.956312 iter 100 value 82.818993 final value 82.818993 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.720589 final value 94.485778 converged Fitting Repeat 2 # weights: 103 initial value 98.000064 final value 94.485770 converged Fitting Repeat 3 # weights: 103 initial value 97.453403 iter 10 value 94.485970 iter 20 value 94.468708 iter 30 value 94.242964 iter 40 value 87.872482 iter 50 value 86.378967 iter 60 value 86.368643 iter 70 value 86.366891 final value 86.366847 converged Fitting Repeat 4 # weights: 103 initial value 104.831265 final value 94.485781 converged Fitting Repeat 5 # weights: 103 initial value 102.019831 final value 94.485818 converged Fitting Repeat 1 # weights: 305 initial value 100.486073 iter 10 value 94.489040 iter 20 value 93.825449 iter 30 value 92.151045 iter 40 value 91.825389 final value 91.825386 converged Fitting Repeat 2 # weights: 305 initial value 95.653452 iter 10 value 94.460487 iter 20 value 94.456659 iter 30 value 92.759022 iter 40 value 87.845400 iter 50 value 87.335773 final value 87.230297 converged Fitting Repeat 3 # weights: 305 initial value 98.420186 iter 10 value 94.449814 iter 20 value 94.445260 iter 30 value 94.442461 iter 40 value 94.022613 iter 50 value 87.479696 iter 60 value 87.445993 iter 70 value 87.162153 iter 80 value 85.623303 iter 90 value 84.870208 iter 100 value 84.311481 final value 84.311481 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 99.582233 iter 10 value 94.488684 iter 20 value 94.472496 iter 30 value 88.619706 iter 40 value 88.049579 final value 88.040793 converged Fitting Repeat 5 # weights: 305 initial value 100.331720 iter 10 value 89.862644 iter 20 value 88.411064 iter 30 value 88.044383 iter 40 value 85.533225 iter 50 value 85.515878 iter 60 value 84.581738 iter 70 value 84.581137 iter 80 value 84.552202 iter 90 value 84.548387 iter 100 value 84.374396 final value 84.374396 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 99.602070 iter 10 value 93.914455 iter 20 value 93.495770 iter 30 value 92.584488 iter 40 value 92.583403 iter 50 value 92.581436 iter 60 value 91.936257 iter 70 value 91.920810 iter 80 value 91.733869 iter 90 value 91.727878 iter 100 value 91.727566 final value 91.727566 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 101.058351 iter 10 value 94.475229 iter 20 value 94.293988 iter 30 value 89.412872 final value 89.412779 converged Fitting Repeat 3 # weights: 507 initial value 104.506052 iter 10 value 94.495634 iter 20 value 94.346017 iter 30 value 87.555700 iter 40 value 86.250168 iter 50 value 86.236099 iter 60 value 86.153301 iter 70 value 85.683086 iter 80 value 85.210794 iter 90 value 85.210465 final value 85.210352 converged Fitting Repeat 4 # weights: 507 initial value 102.080241 iter 10 value 94.491978 iter 20 value 91.093980 iter 30 value 86.333934 final value 86.333802 converged Fitting Repeat 5 # weights: 507 initial value 98.073738 iter 10 value 94.492143 iter 20 value 94.451793 iter 30 value 88.284835 iter 40 value 86.278616 iter 50 value 86.099345 final value 86.098788 converged Fitting Repeat 1 # weights: 103 initial value 104.001129 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 100.530886 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 101.745388 final value 94.305882 converged Fitting Repeat 4 # weights: 103 initial value 99.204281 final value 94.484210 converged Fitting Repeat 5 # weights: 103 initial value 97.686597 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 102.160492 final value 94.354396 converged Fitting Repeat 2 # weights: 305 initial value 96.602433 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 95.691652 iter 10 value 94.046738 final value 94.046703 converged Fitting Repeat 4 # weights: 305 initial value 103.323138 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 94.913919 iter 10 value 94.145120 iter 20 value 94.132269 final value 94.130499 converged Fitting Repeat 1 # weights: 507 initial value 101.922141 iter 10 value 93.105396 final value 90.971959 converged Fitting Repeat 2 # weights: 507 initial value 104.397637 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 124.824802 iter 10 value 94.573905 iter 20 value 94.040161 iter 30 value 94.038598 iter 30 value 94.038597 iter 30 value 94.038597 final value 94.038597 converged Fitting Repeat 4 # weights: 507 initial value 100.389742 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 115.265951 final value 94.144481 converged Fitting Repeat 1 # weights: 103 initial value 107.992226 iter 10 value 94.457726 iter 20 value 94.137471 iter 30 value 94.105074 iter 40 value 93.719465 iter 50 value 89.036401 iter 60 value 87.068376 iter 70 value 86.545297 iter 80 value 86.472316 iter 90 value 85.861538 iter 100 value 85.657909 final value 85.657909 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 116.016603 iter 10 value 94.481600 iter 20 value 94.154441 iter 30 value 94.114595 iter 40 value 92.358031 iter 50 value 89.299485 iter 60 value 89.022756 iter 70 value 87.299970 iter 80 value 87.165491 iter 90 value 87.008949 iter 100 value 86.983479 final value 86.983479 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 98.687416 iter 10 value 94.489410 iter 20 value 94.404455 iter 30 value 94.233405 iter 40 value 90.115776 iter 50 value 88.392012 iter 60 value 87.429797 iter 70 value 87.222617 iter 80 value 87.057962 iter 90 value 86.987583 final value 86.983453 converged Fitting Repeat 4 # weights: 103 initial value 100.498018 iter 10 value 94.490967 iter 20 value 88.746982 iter 30 value 87.779716 iter 40 value 87.562155 iter 50 value 87.428756 iter 60 value 87.150058 iter 70 value 86.927170 iter 80 value 86.715100 final value 86.711769 converged Fitting Repeat 5 # weights: 103 initial value 99.104929 iter 10 value 94.492683 iter 20 value 94.423545 iter 30 value 89.985717 iter 40 value 89.284910 iter 50 value 88.924623 iter 60 value 87.710962 iter 70 value 87.072469 iter 80 value 87.000466 iter 90 value 86.823931 iter 100 value 86.722359 final value 86.722359 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 99.982072 iter 10 value 92.226610 iter 20 value 90.965211 iter 30 value 90.870349 iter 40 value 89.318440 iter 50 value 86.947258 iter 60 value 86.738664 iter 70 value 86.625780 iter 80 value 86.507976 iter 90 value 86.496638 iter 100 value 86.422765 final value 86.422765 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 103.910129 iter 10 value 94.847752 iter 20 value 92.310647 iter 30 value 88.313128 iter 40 value 87.743832 iter 50 value 87.402483 iter 60 value 87.032734 iter 70 value 85.598397 iter 80 value 84.549171 iter 90 value 84.256610 iter 100 value 83.865742 final value 83.865742 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.686988 iter 10 value 94.531694 iter 20 value 94.111111 iter 30 value 90.138771 iter 40 value 89.391082 iter 50 value 88.097949 iter 60 value 86.784817 iter 70 value 85.354043 iter 80 value 84.059077 iter 90 value 83.594667 iter 100 value 83.422638 final value 83.422638 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 104.217085 iter 10 value 93.780096 iter 20 value 88.955006 iter 30 value 87.971103 iter 40 value 87.537655 iter 50 value 86.933289 iter 60 value 86.842530 iter 70 value 86.553107 iter 80 value 86.490067 iter 90 value 86.314102 iter 100 value 86.120315 final value 86.120315 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 108.561809 iter 10 value 94.422795 iter 20 value 90.683638 iter 30 value 87.934836 iter 40 value 86.764071 iter 50 value 85.078524 iter 60 value 84.648175 iter 70 value 84.380520 iter 80 value 83.863539 iter 90 value 83.689034 iter 100 value 83.636972 final value 83.636972 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 103.477824 iter 10 value 94.451065 iter 20 value 89.887939 iter 30 value 88.322960 iter 40 value 87.404090 iter 50 value 86.600493 iter 60 value 86.293984 iter 70 value 84.175611 iter 80 value 83.347869 iter 90 value 82.992300 iter 100 value 82.972024 final value 82.972024 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 135.006854 iter 10 value 94.998500 iter 20 value 94.348082 iter 30 value 92.238968 iter 40 value 89.757298 iter 50 value 88.769282 iter 60 value 87.318771 iter 70 value 87.043600 iter 80 value 86.416625 iter 90 value 86.022053 iter 100 value 85.644775 final value 85.644775 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 104.679382 iter 10 value 94.561457 iter 20 value 93.284585 iter 30 value 90.202834 iter 40 value 88.601031 iter 50 value 87.953661 iter 60 value 86.258087 iter 70 value 84.573924 iter 80 value 83.994369 iter 90 value 83.592524 iter 100 value 83.480939 final value 83.480939 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 108.437031 iter 10 value 94.322033 iter 20 value 89.886553 iter 30 value 89.311559 iter 40 value 87.227892 iter 50 value 86.352759 iter 60 value 85.476439 iter 70 value 84.936839 iter 80 value 84.374749 iter 90 value 84.150676 iter 100 value 84.030534 final value 84.030534 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 109.665031 iter 10 value 94.593489 iter 20 value 94.243450 iter 30 value 94.105276 iter 40 value 94.079778 iter 50 value 88.914439 iter 60 value 85.183660 iter 70 value 84.540801 iter 80 value 84.008400 iter 90 value 83.662087 iter 100 value 83.473339 final value 83.473339 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 114.990543 final value 94.356219 converged Fitting Repeat 2 # weights: 103 initial value 99.793374 final value 94.355986 converged Fitting Repeat 3 # weights: 103 initial value 96.999754 final value 94.485765 converged Fitting Repeat 4 # weights: 103 initial value 99.351289 iter 10 value 94.485773 final value 94.484215 converged Fitting Repeat 5 # weights: 103 initial value 96.203815 final value 94.485699 converged Fitting Repeat 1 # weights: 305 initial value 104.439163 final value 94.489294 converged Fitting Repeat 2 # weights: 305 initial value 95.798043 iter 10 value 94.120151 iter 20 value 94.114227 iter 30 value 94.068865 iter 40 value 94.067057 final value 94.067052 converged Fitting Repeat 3 # weights: 305 initial value 97.504956 iter 10 value 94.099507 iter 20 value 94.071950 iter 30 value 94.069257 iter 40 value 94.067091 iter 40 value 94.067091 final value 94.067091 converged Fitting Repeat 4 # weights: 305 initial value 98.555643 iter 10 value 93.491348 iter 20 value 93.215877 iter 30 value 92.657011 iter 40 value 92.295310 iter 50 value 92.291871 iter 60 value 92.276848 iter 70 value 92.276712 iter 80 value 92.121591 iter 90 value 92.076557 iter 100 value 92.075045 final value 92.075045 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 107.026849 iter 10 value 94.288283 iter 20 value 94.162064 iter 30 value 94.142164 iter 40 value 94.127244 iter 50 value 90.223021 iter 60 value 88.810549 final value 88.810333 converged Fitting Repeat 1 # weights: 507 initial value 118.587529 iter 10 value 94.436881 iter 20 value 94.430321 final value 94.430300 converged Fitting Repeat 2 # weights: 507 initial value 99.734843 iter 10 value 94.362846 iter 20 value 94.354552 iter 30 value 94.048048 iter 40 value 89.460436 iter 50 value 89.458884 iter 60 value 87.975852 iter 70 value 86.772076 iter 80 value 86.696552 iter 90 value 86.696187 iter 100 value 86.690428 final value 86.690428 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 95.345408 iter 10 value 94.362915 iter 20 value 93.997969 iter 30 value 93.944542 iter 40 value 93.941800 iter 50 value 93.940758 iter 60 value 93.937887 final value 93.937875 converged Fitting Repeat 4 # weights: 507 initial value 105.933709 iter 10 value 94.362584 iter 20 value 94.355533 final value 94.355118 converged Fitting Repeat 5 # weights: 507 initial value 104.174650 iter 10 value 94.362996 iter 20 value 91.881973 iter 30 value 87.039326 iter 40 value 86.837701 iter 50 value 86.803482 iter 60 value 86.767116 iter 70 value 86.330278 iter 80 value 86.244567 final value 86.244492 converged Fitting Repeat 1 # weights: 103 initial value 99.005392 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 105.562371 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 96.399433 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 107.451032 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 97.147529 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 103.855011 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 95.578381 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 115.898246 iter 10 value 92.945360 final value 92.945355 converged Fitting Repeat 4 # weights: 305 initial value 98.571720 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 98.193461 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 132.226717 iter 10 value 92.313874 iter 20 value 91.581782 iter 30 value 86.332097 iter 40 value 83.100566 iter 50 value 83.093334 final value 83.093238 converged Fitting Repeat 2 # weights: 507 initial value 98.852504 iter 10 value 91.461255 final value 91.460536 converged Fitting Repeat 3 # weights: 507 initial value 96.732041 final value 94.052910 converged Fitting Repeat 4 # weights: 507 initial value 97.107718 final value 93.869755 converged Fitting Repeat 5 # weights: 507 initial value 109.371615 iter 10 value 87.821578 iter 20 value 84.571279 iter 30 value 84.478827 final value 84.478730 converged Fitting Repeat 1 # weights: 103 initial value 107.034869 iter 10 value 93.323540 iter 20 value 89.633195 iter 30 value 88.355668 iter 40 value 84.497476 iter 50 value 83.970795 iter 60 value 83.949793 final value 83.949000 converged Fitting Repeat 2 # weights: 103 initial value 100.539559 iter 10 value 93.212706 iter 20 value 93.137516 iter 30 value 88.970480 iter 40 value 86.431783 iter 50 value 85.983120 iter 60 value 81.961910 iter 70 value 80.203173 iter 80 value 80.067119 iter 90 value 79.798103 iter 100 value 79.602062 final value 79.602062 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 106.735157 iter 10 value 93.288286 iter 20 value 93.024911 iter 30 value 92.945361 iter 40 value 91.971887 iter 50 value 87.267932 iter 60 value 86.348772 iter 70 value 82.453404 iter 80 value 80.990543 iter 90 value 80.637352 iter 100 value 80.311208 final value 80.311208 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 97.444997 iter 10 value 93.311058 iter 20 value 92.800587 iter 30 value 87.889101 iter 40 value 86.050761 iter 50 value 85.467030 iter 60 value 85.103381 iter 70 value 84.622031 iter 80 value 81.208018 iter 90 value 80.464089 iter 100 value 79.767364 final value 79.767364 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 101.780141 iter 10 value 93.892846 iter 20 value 89.430249 iter 30 value 88.471139 iter 40 value 84.188561 iter 50 value 81.438598 iter 60 value 80.233414 iter 70 value 80.025575 iter 80 value 79.977039 iter 90 value 79.949577 final value 79.941797 converged Fitting Repeat 1 # weights: 305 initial value 104.008186 iter 10 value 93.887060 iter 20 value 93.262024 iter 30 value 90.204696 iter 40 value 82.453493 iter 50 value 81.341016 iter 60 value 80.870929 iter 70 value 80.031731 iter 80 value 79.627348 iter 90 value 79.570725 iter 100 value 79.569787 final value 79.569787 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 103.029248 iter 10 value 94.110883 iter 20 value 86.211846 iter 30 value 84.961707 iter 40 value 84.429314 iter 50 value 83.547413 iter 60 value 82.078655 iter 70 value 79.579868 iter 80 value 78.712168 iter 90 value 78.582402 iter 100 value 78.545201 final value 78.545201 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 114.801606 iter 10 value 94.392859 iter 20 value 91.636964 iter 30 value 85.470727 iter 40 value 82.510501 iter 50 value 80.462894 iter 60 value 80.091453 iter 70 value 79.882286 iter 80 value 79.857815 final value 79.857154 converged Fitting Repeat 4 # weights: 305 initial value 99.919288 iter 10 value 94.035192 iter 20 value 93.081736 iter 30 value 84.218370 iter 40 value 80.177076 iter 50 value 79.356814 iter 60 value 79.298649 iter 70 value 79.265094 iter 80 value 79.150267 iter 90 value 78.782597 iter 100 value 78.221024 final value 78.221024 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.315587 iter 10 value 93.478785 iter 20 value 89.078863 iter 30 value 86.067744 iter 40 value 85.506356 iter 50 value 85.406899 iter 60 value 83.989693 iter 70 value 82.601114 iter 80 value 81.584910 iter 90 value 79.809189 iter 100 value 79.147230 final value 79.147230 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 109.229681 iter 10 value 94.194547 iter 20 value 87.385680 iter 30 value 85.117840 iter 40 value 83.385881 iter 50 value 82.692093 iter 60 value 81.011662 iter 70 value 80.536400 iter 80 value 80.506370 iter 90 value 80.473905 iter 100 value 80.045513 final value 80.045513 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 108.353582 iter 10 value 93.071547 iter 20 value 87.070226 iter 30 value 85.926312 iter 40 value 84.368310 iter 50 value 83.245780 iter 60 value 82.515141 iter 70 value 80.529889 iter 80 value 80.176267 iter 90 value 79.749810 iter 100 value 79.684203 final value 79.684203 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 111.182612 iter 10 value 94.017099 iter 20 value 90.710675 iter 30 value 86.048037 iter 40 value 85.250407 iter 50 value 84.950106 iter 60 value 80.771611 iter 70 value 79.604339 iter 80 value 78.851896 iter 90 value 78.566508 iter 100 value 78.126049 final value 78.126049 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 106.794095 iter 10 value 85.635423 iter 20 value 82.760925 iter 30 value 80.580731 iter 40 value 79.196649 iter 50 value 78.773546 iter 60 value 78.645013 iter 70 value 78.473950 iter 80 value 78.315146 iter 90 value 78.069148 iter 100 value 78.006632 final value 78.006632 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 116.773654 iter 10 value 94.176937 iter 20 value 93.422863 iter 30 value 86.810489 iter 40 value 85.213769 iter 50 value 84.394712 iter 60 value 84.073040 iter 70 value 81.911351 iter 80 value 80.976810 iter 90 value 80.789383 iter 100 value 80.105358 final value 80.105358 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 96.879981 iter 10 value 94.054514 iter 20 value 94.008102 iter 30 value 92.955059 iter 40 value 92.951194 iter 50 value 92.948320 final value 92.948314 converged Fitting Repeat 2 # weights: 103 initial value 105.478741 final value 94.054472 converged Fitting Repeat 3 # weights: 103 initial value 95.993990 final value 94.054675 converged Fitting Repeat 4 # weights: 103 initial value 105.015965 iter 10 value 94.054539 iter 20 value 94.052931 iter 30 value 93.452842 iter 40 value 84.573803 iter 40 value 84.573803 iter 40 value 84.573803 final value 84.573803 converged Fitting Repeat 5 # weights: 103 initial value 94.511394 iter 10 value 94.054499 iter 20 value 94.052952 iter 30 value 87.485664 iter 40 value 81.210471 iter 50 value 81.205629 iter 60 value 80.422800 iter 70 value 80.307731 iter 80 value 79.720688 iter 90 value 79.257934 iter 100 value 79.255353 final value 79.255353 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 110.498827 iter 10 value 94.057793 iter 20 value 93.517641 final value 92.946342 converged Fitting Repeat 2 # weights: 305 initial value 107.765383 iter 10 value 92.635507 iter 20 value 85.251853 iter 30 value 85.191175 iter 40 value 85.071287 iter 50 value 85.063985 iter 60 value 84.296043 iter 70 value 84.289377 final value 84.288960 converged Fitting Repeat 3 # weights: 305 initial value 110.643251 iter 10 value 94.058162 iter 20 value 94.053477 final value 94.052957 converged Fitting Repeat 4 # weights: 305 initial value 94.371912 iter 10 value 94.054434 iter 20 value 93.119759 iter 30 value 92.959910 iter 40 value 92.950004 iter 50 value 92.937037 iter 60 value 92.648316 iter 70 value 92.646839 final value 92.646482 converged Fitting Repeat 5 # weights: 305 initial value 97.076665 iter 10 value 92.950831 iter 20 value 92.946622 iter 30 value 92.707487 iter 40 value 92.645423 iter 50 value 92.645317 final value 92.645303 converged Fitting Repeat 1 # weights: 507 initial value 117.407981 iter 10 value 92.954595 iter 20 value 92.953614 iter 30 value 91.323925 iter 40 value 88.302397 iter 50 value 82.213788 iter 60 value 80.773593 iter 70 value 78.108217 iter 80 value 77.734368 iter 90 value 76.992332 iter 100 value 76.968632 final value 76.968632 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 99.693813 iter 10 value 92.954803 iter 20 value 92.952514 iter 30 value 89.341903 iter 40 value 84.133333 iter 50 value 84.001827 iter 60 value 83.996664 iter 70 value 83.995547 iter 80 value 83.994665 iter 90 value 83.993993 final value 83.993977 converged Fitting Repeat 3 # weights: 507 initial value 100.088307 iter 10 value 94.060351 iter 20 value 92.965761 final value 92.946425 converged Fitting Repeat 4 # weights: 507 initial value 96.058441 iter 10 value 91.774946 iter 20 value 91.757824 iter 30 value 91.709876 iter 40 value 91.580058 iter 50 value 91.578398 iter 60 value 91.547184 iter 70 value 91.341925 iter 80 value 91.337902 iter 90 value 91.333332 iter 100 value 90.090161 final value 90.090161 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 102.926184 iter 10 value 94.060772 iter 20 value 94.053662 iter 30 value 93.572354 iter 40 value 88.155636 iter 50 value 83.072893 iter 60 value 82.694629 iter 70 value 82.562034 iter 80 value 82.493249 iter 90 value 82.484631 iter 100 value 81.718419 final value 81.718419 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 100.713385 iter 10 value 88.064661 iter 20 value 85.102682 iter 30 value 85.081684 final value 85.081621 converged Fitting Repeat 2 # weights: 103 initial value 94.761369 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 115.639128 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 96.785051 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 94.172697 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 95.656707 iter 10 value 93.180699 iter 20 value 93.006250 final value 92.933333 converged Fitting Repeat 2 # weights: 305 initial value 111.512717 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 97.964315 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 95.446913 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 102.404150 final value 93.830514 converged Fitting Repeat 1 # weights: 507 initial value 103.368485 iter 10 value 92.070705 iter 20 value 91.059197 iter 30 value 91.055484 final value 91.055424 converged Fitting Repeat 2 # weights: 507 initial value 110.137499 final value 93.836066 converged Fitting Repeat 3 # weights: 507 initial value 118.772353 final value 93.836066 converged Fitting Repeat 4 # weights: 507 initial value 99.741443 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 108.279454 iter 10 value 92.935799 final value 92.933333 converged Fitting Repeat 1 # weights: 103 initial value 97.066685 iter 10 value 93.854413 iter 20 value 86.007248 iter 30 value 85.611391 iter 40 value 82.403617 iter 50 value 81.343322 iter 60 value 79.102731 iter 70 value 78.733350 iter 80 value 78.624152 final value 78.573157 converged Fitting Repeat 2 # weights: 103 initial value 107.041746 iter 10 value 93.970239 iter 20 value 93.246886 iter 30 value 87.995000 iter 40 value 84.585866 iter 50 value 80.553939 iter 60 value 79.135688 iter 70 value 78.678695 iter 80 value 78.499779 iter 90 value 78.464226 final value 78.462419 converged Fitting Repeat 3 # weights: 103 initial value 103.957085 iter 10 value 93.585927 iter 20 value 86.248372 iter 30 value 83.006982 iter 40 value 81.532118 iter 50 value 81.366897 iter 60 value 79.468222 iter 70 value 78.903460 iter 80 value 78.695915 iter 90 value 78.573158 final value 78.573156 converged Fitting Repeat 4 # weights: 103 initial value 105.626908 iter 10 value 95.138519 iter 20 value 94.056511 iter 30 value 94.054972 iter 40 value 87.621441 iter 50 value 86.057692 iter 60 value 83.434764 iter 70 value 83.258560 iter 80 value 83.155424 iter 90 value 83.039599 iter 100 value 83.022548 final value 83.022548 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 100.785036 iter 10 value 94.181473 iter 20 value 94.005202 iter 30 value 93.155151 iter 40 value 93.134720 iter 50 value 93.122351 final value 93.121065 converged Fitting Repeat 1 # weights: 305 initial value 99.167545 iter 10 value 94.079533 iter 20 value 88.358690 iter 30 value 85.049115 iter 40 value 83.709311 iter 50 value 81.326910 iter 60 value 80.678657 iter 70 value 80.461943 iter 80 value 79.099117 iter 90 value 78.765550 iter 100 value 78.492624 final value 78.492624 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 110.298357 iter 10 value 97.741561 iter 20 value 93.943061 iter 30 value 84.154400 iter 40 value 83.075456 iter 50 value 82.483089 iter 60 value 80.323498 iter 70 value 78.767789 iter 80 value 78.231814 iter 90 value 77.129281 iter 100 value 76.903538 final value 76.903538 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 104.575798 iter 10 value 93.453524 iter 20 value 88.961926 iter 30 value 85.239539 iter 40 value 83.808880 iter 50 value 83.206910 iter 60 value 83.142082 iter 70 value 79.101196 iter 80 value 78.062980 iter 90 value 77.377179 iter 100 value 77.192409 final value 77.192409 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 103.534652 iter 10 value 92.505345 iter 20 value 85.653001 iter 30 value 85.338679 iter 40 value 85.101759 iter 50 value 81.376026 iter 60 value 78.577517 iter 70 value 78.239484 iter 80 value 77.888240 iter 90 value 77.846811 iter 100 value 77.805972 final value 77.805972 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 104.789777 iter 10 value 93.890779 iter 20 value 87.176024 iter 30 value 84.317150 iter 40 value 82.584777 iter 50 value 80.781312 iter 60 value 78.637031 iter 70 value 77.799693 iter 80 value 77.472954 iter 90 value 77.444745 iter 100 value 77.443851 final value 77.443851 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 102.762591 iter 10 value 93.825517 iter 20 value 82.944790 iter 30 value 80.419752 iter 40 value 78.881486 iter 50 value 77.795401 iter 60 value 77.551040 iter 70 value 77.444739 iter 80 value 77.404611 iter 90 value 77.226288 iter 100 value 76.970231 final value 76.970231 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 114.823519 iter 10 value 94.019008 iter 20 value 90.076909 iter 30 value 86.526146 iter 40 value 82.208914 iter 50 value 79.411482 iter 60 value 78.082765 iter 70 value 77.762796 iter 80 value 77.556333 iter 90 value 77.422955 iter 100 value 77.229255 final value 77.229255 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 142.099873 iter 10 value 97.053698 iter 20 value 95.221134 iter 30 value 92.262355 iter 40 value 88.101429 iter 50 value 87.397485 iter 60 value 84.606265 iter 70 value 82.293503 iter 80 value 80.514737 iter 90 value 79.477686 iter 100 value 77.963344 final value 77.963344 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 110.051916 iter 10 value 94.165260 iter 20 value 93.786983 iter 30 value 87.666434 iter 40 value 81.493807 iter 50 value 79.717747 iter 60 value 79.292799 iter 70 value 78.392389 iter 80 value 77.876900 iter 90 value 77.404321 iter 100 value 77.192429 final value 77.192429 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 104.893950 iter 10 value 94.062477 iter 20 value 93.468782 iter 30 value 83.872873 iter 40 value 83.159803 iter 50 value 79.914909 iter 60 value 77.694918 iter 70 value 77.442938 iter 80 value 77.204136 iter 90 value 76.944354 iter 100 value 76.920908 final value 76.920908 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.053372 final value 94.054681 converged Fitting Repeat 2 # weights: 103 initial value 98.636298 iter 10 value 94.054529 final value 94.053097 converged Fitting Repeat 3 # weights: 103 initial value 97.832523 final value 94.054616 converged Fitting Repeat 4 # weights: 103 initial value 101.254587 final value 94.054357 converged Fitting Repeat 5 # weights: 103 initial value 97.669731 final value 94.054567 converged Fitting Repeat 1 # weights: 305 initial value 100.345047 iter 10 value 93.841297 iter 20 value 93.837767 iter 30 value 93.226408 iter 40 value 89.771453 iter 50 value 88.450479 iter 60 value 88.118510 iter 70 value 88.066138 iter 80 value 88.033538 iter 90 value 88.027111 iter 90 value 88.027111 iter 90 value 88.027111 final value 88.027111 converged Fitting Repeat 2 # weights: 305 initial value 97.079400 iter 10 value 92.744860 iter 20 value 92.740150 iter 30 value 92.499839 iter 40 value 92.496047 iter 50 value 92.494329 iter 60 value 92.494187 iter 70 value 92.481887 iter 80 value 92.481281 final value 92.481277 converged Fitting Repeat 3 # weights: 305 initial value 97.347727 iter 10 value 94.058163 iter 20 value 94.053080 iter 30 value 93.993152 iter 40 value 93.458467 iter 50 value 93.456422 iter 60 value 93.455872 iter 70 value 84.290647 iter 80 value 83.523386 iter 90 value 82.822413 iter 100 value 82.800704 final value 82.800704 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 94.714077 iter 10 value 94.056122 iter 20 value 93.081720 iter 30 value 92.422466 iter 40 value 88.095347 iter 50 value 83.198213 iter 60 value 83.168626 iter 70 value 80.823968 iter 80 value 80.810120 iter 90 value 80.807652 iter 100 value 80.740461 final value 80.740461 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 100.781770 iter 10 value 94.058311 iter 20 value 94.053239 iter 30 value 93.134490 final value 87.248352 converged Fitting Repeat 1 # weights: 507 initial value 104.995747 iter 10 value 93.844596 iter 20 value 93.307071 iter 30 value 84.497717 iter 40 value 83.528400 iter 50 value 81.230669 iter 60 value 81.156283 iter 70 value 80.860794 iter 80 value 79.496726 iter 90 value 79.451363 iter 100 value 79.370308 final value 79.370308 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 111.326332 iter 10 value 94.059251 iter 20 value 93.614139 iter 30 value 89.936236 iter 40 value 85.455499 iter 50 value 85.273321 iter 60 value 85.272986 iter 70 value 85.272900 final value 85.272895 converged Fitting Repeat 3 # weights: 507 initial value 96.166665 iter 10 value 93.844733 iter 20 value 93.838031 final value 93.837460 converged Fitting Repeat 4 # weights: 507 initial value 98.551625 iter 10 value 84.314371 iter 20 value 83.272358 iter 30 value 80.153318 iter 40 value 79.909932 iter 50 value 79.843620 iter 60 value 79.023944 iter 70 value 78.971084 iter 80 value 78.965287 iter 90 value 78.960214 iter 90 value 78.960213 final value 78.960213 converged Fitting Repeat 5 # weights: 507 initial value 104.662527 iter 10 value 93.464859 iter 20 value 93.432795 iter 30 value 92.948722 iter 40 value 92.921155 final value 92.921126 converged Fitting Repeat 1 # weights: 103 initial value 96.212076 iter 10 value 84.974681 final value 84.974324 converged Fitting Repeat 2 # weights: 103 initial value 100.722357 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 109.612067 final value 94.467391 converged Fitting Repeat 4 # weights: 103 initial value 95.637317 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 110.794143 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 100.014978 final value 94.467391 converged Fitting Repeat 2 # weights: 305 initial value 110.811361 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 128.936263 iter 10 value 94.467391 iter 10 value 94.467391 iter 10 value 94.467391 final value 94.467391 converged Fitting Repeat 4 # weights: 305 initial value 123.269662 final value 94.467391 converged Fitting Repeat 5 # weights: 305 initial value 124.679825 iter 10 value 91.252086 iter 20 value 90.320553 final value 90.320332 converged Fitting Repeat 1 # weights: 507 initial value 132.762993 iter 10 value 88.906174 iter 20 value 84.484151 final value 84.480002 converged Fitting Repeat 2 # weights: 507 initial value 111.675418 final value 94.467391 converged Fitting Repeat 3 # weights: 507 initial value 112.417926 final value 94.443182 converged Fitting Repeat 4 # weights: 507 initial value 108.814355 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 127.494501 final value 94.467391 converged Fitting Repeat 1 # weights: 103 initial value 99.886374 iter 10 value 94.316416 iter 20 value 85.628823 iter 30 value 84.602479 iter 40 value 81.446912 iter 50 value 81.399966 iter 60 value 81.396342 iter 70 value 81.379605 iter 80 value 81.272293 final value 81.260365 converged Fitting Repeat 2 # weights: 103 initial value 105.142060 iter 10 value 94.437588 iter 20 value 91.253866 iter 30 value 87.184126 iter 40 value 84.290645 iter 50 value 83.021137 iter 60 value 81.704097 iter 70 value 81.004810 iter 80 value 80.975514 final value 80.975443 converged Fitting Repeat 3 # weights: 103 initial value 106.505741 iter 10 value 93.110542 iter 20 value 91.359936 iter 30 value 82.746912 iter 40 value 81.894577 iter 50 value 81.658202 iter 60 value 81.549813 iter 70 value 81.426715 iter 80 value 80.732188 iter 90 value 80.442197 final value 80.422886 converged Fitting Repeat 4 # weights: 103 initial value 96.826695 iter 10 value 94.452979 iter 20 value 83.307942 iter 30 value 82.223564 iter 40 value 82.118525 iter 50 value 81.391784 iter 60 value 81.368329 final value 81.368327 converged Fitting Repeat 5 # weights: 103 initial value 102.576861 iter 10 value 92.302063 iter 20 value 82.854981 iter 30 value 82.027475 iter 40 value 81.934814 iter 50 value 81.414814 iter 60 value 81.368327 iter 60 value 81.368327 iter 60 value 81.368327 final value 81.368327 converged Fitting Repeat 1 # weights: 305 initial value 100.720830 iter 10 value 87.531419 iter 20 value 83.275610 iter 30 value 81.853174 iter 40 value 80.120525 iter 50 value 79.614041 iter 60 value 79.090002 iter 70 value 79.015779 iter 80 value 78.964129 iter 90 value 78.947201 iter 100 value 78.932507 final value 78.932507 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 102.327263 iter 10 value 94.928570 iter 20 value 86.880757 iter 30 value 85.883436 iter 40 value 83.258651 iter 50 value 82.755237 iter 60 value 82.214237 iter 70 value 80.918120 iter 80 value 80.394000 final value 80.389215 converged Fitting Repeat 3 # weights: 305 initial value 121.294648 iter 10 value 94.426378 iter 20 value 90.326762 iter 30 value 89.897593 iter 40 value 83.602490 iter 50 value 82.232701 iter 60 value 81.390025 iter 70 value 81.145150 iter 80 value 81.017227 iter 90 value 80.337545 iter 100 value 79.017476 final value 79.017476 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 111.276894 iter 10 value 94.130035 iter 20 value 88.832462 iter 30 value 85.772969 iter 40 value 84.962443 iter 50 value 83.606397 iter 60 value 82.287236 iter 70 value 81.979888 iter 80 value 81.284801 iter 90 value 81.086359 iter 100 value 81.008027 final value 81.008027 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 112.500783 iter 10 value 95.305894 iter 20 value 91.984038 iter 30 value 83.686423 iter 40 value 80.846114 iter 50 value 80.081356 iter 60 value 79.701015 iter 70 value 79.304135 iter 80 value 79.266217 iter 90 value 79.204971 iter 100 value 79.173839 final value 79.173839 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 110.780791 iter 10 value 97.640305 iter 20 value 94.594809 iter 30 value 88.225651 iter 40 value 83.012165 iter 50 value 82.393258 iter 60 value 81.867989 iter 70 value 81.287780 iter 80 value 81.267438 iter 90 value 81.095953 iter 100 value 80.856176 final value 80.856176 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 111.684402 iter 10 value 93.794213 iter 20 value 88.489210 iter 30 value 87.630782 iter 40 value 82.138964 iter 50 value 81.320168 iter 60 value 80.593213 iter 70 value 80.188998 iter 80 value 80.147665 iter 90 value 79.824687 iter 100 value 79.524733 final value 79.524733 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 115.534439 iter 10 value 94.948527 iter 20 value 94.391419 iter 30 value 90.749991 iter 40 value 87.500645 iter 50 value 84.257948 iter 60 value 82.252441 iter 70 value 81.438338 iter 80 value 80.843075 iter 90 value 79.970023 iter 100 value 79.260078 final value 79.260078 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 104.901379 iter 10 value 94.614137 iter 20 value 94.393833 iter 30 value 87.354152 iter 40 value 86.464121 iter 50 value 83.780827 iter 60 value 81.188506 iter 70 value 80.687046 iter 80 value 80.201834 iter 90 value 80.017548 iter 100 value 79.368688 final value 79.368688 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 103.882493 iter 10 value 94.485401 iter 20 value 87.877143 iter 30 value 82.465521 iter 40 value 82.087371 iter 50 value 81.129735 iter 60 value 81.070975 iter 70 value 80.767816 iter 80 value 80.303756 iter 90 value 80.154831 iter 100 value 80.110388 final value 80.110388 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.042716 final value 94.485685 converged Fitting Repeat 2 # weights: 103 initial value 95.404970 final value 94.485996 converged Fitting Repeat 3 # weights: 103 initial value 95.857224 iter 10 value 94.485861 iter 20 value 94.464679 iter 30 value 93.696312 iter 40 value 88.382613 iter 50 value 88.347134 iter 60 value 88.282914 iter 70 value 88.156196 iter 80 value 87.926379 iter 90 value 87.261357 iter 100 value 87.258154 final value 87.258154 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 122.663444 iter 10 value 94.485964 iter 20 value 94.484255 iter 30 value 91.435519 iter 40 value 91.394572 iter 50 value 91.381687 iter 60 value 91.375097 iter 70 value 91.373325 iter 80 value 91.372982 final value 91.372886 converged Fitting Repeat 5 # weights: 103 initial value 104.267415 iter 10 value 94.468905 iter 10 value 94.468904 iter 10 value 94.468904 final value 94.468904 converged Fitting Repeat 1 # weights: 305 initial value 99.561418 iter 10 value 94.488670 iter 20 value 87.583980 iter 30 value 86.333761 iter 40 value 85.934233 iter 50 value 85.433527 iter 60 value 84.977481 iter 70 value 84.975727 iter 80 value 84.292906 final value 84.244796 converged Fitting Repeat 2 # weights: 305 initial value 105.914986 iter 10 value 94.489251 iter 20 value 94.483861 iter 30 value 87.070734 iter 40 value 85.861683 iter 50 value 85.841682 iter 60 value 84.897914 iter 70 value 84.405063 iter 80 value 84.402503 iter 90 value 84.395691 iter 100 value 84.336608 final value 84.336608 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 114.064268 iter 10 value 90.979578 iter 20 value 84.743498 iter 30 value 84.509077 iter 40 value 84.498423 iter 50 value 83.462556 iter 60 value 83.364538 iter 70 value 81.856913 iter 80 value 81.784118 iter 90 value 81.779219 iter 100 value 81.776836 final value 81.776836 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 98.053751 iter 10 value 94.488899 iter 20 value 94.484120 iter 30 value 84.390970 iter 40 value 80.767039 iter 50 value 80.690623 iter 60 value 79.364697 iter 70 value 78.623566 iter 80 value 78.146641 iter 90 value 78.098446 final value 78.094628 converged Fitting Repeat 5 # weights: 305 initial value 99.358779 iter 10 value 94.433932 iter 20 value 94.429651 iter 30 value 94.275918 iter 30 value 94.275918 iter 30 value 94.275918 final value 94.275918 converged Fitting Repeat 1 # weights: 507 initial value 124.073148 iter 10 value 93.313369 iter 20 value 93.306311 iter 30 value 84.343096 iter 40 value 84.116072 iter 50 value 84.110125 iter 60 value 84.072761 iter 70 value 84.069220 iter 80 value 83.221401 iter 90 value 81.953707 iter 100 value 81.265707 final value 81.265707 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 97.891614 iter 10 value 94.492297 iter 20 value 94.428738 iter 30 value 92.634946 iter 40 value 81.005735 iter 50 value 80.762653 iter 60 value 80.617452 iter 70 value 80.617366 iter 80 value 80.616879 final value 80.616831 converged Fitting Repeat 3 # weights: 507 initial value 130.032316 iter 10 value 94.492804 iter 20 value 94.222503 iter 30 value 92.921468 iter 40 value 91.133105 iter 50 value 91.132025 iter 60 value 91.131647 iter 70 value 90.879048 iter 80 value 90.712883 final value 90.712869 converged Fitting Repeat 4 # weights: 507 initial value 95.323581 iter 10 value 88.387920 iter 20 value 83.476322 iter 30 value 83.321971 iter 40 value 83.320259 final value 83.320052 converged Fitting Repeat 5 # weights: 507 initial value 107.040132 iter 10 value 94.492818 iter 20 value 94.485237 iter 30 value 86.370403 iter 40 value 80.946012 iter 50 value 79.415026 iter 60 value 78.146457 iter 70 value 78.037427 iter 80 value 77.895310 iter 90 value 77.842207 iter 100 value 77.840677 final value 77.840677 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 168.953184 iter 10 value 117.895410 iter 20 value 117.890835 iter 30 value 116.173616 iter 40 value 107.165742 iter 50 value 107.015008 iter 60 value 105.373166 iter 70 value 105.066832 iter 80 value 105.060535 iter 90 value 105.050246 iter 100 value 105.039405 final value 105.039405 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 120.203039 iter 10 value 117.895247 iter 20 value 117.882424 iter 30 value 113.840094 iter 40 value 107.041582 iter 50 value 107.028187 iter 60 value 105.393086 iter 70 value 105.054450 iter 80 value 105.052254 iter 90 value 104.772361 iter 100 value 104.567746 final value 104.567746 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 119.341314 iter 10 value 117.763449 iter 20 value 117.760470 iter 20 value 117.760469 iter 20 value 117.760469 final value 117.760469 converged Fitting Repeat 4 # weights: 305 initial value 120.066381 iter 10 value 117.895032 iter 20 value 117.154190 iter 30 value 115.923840 iter 40 value 112.776375 iter 50 value 106.837076 iter 60 value 105.129962 iter 70 value 105.129887 final value 105.129465 converged Fitting Repeat 5 # weights: 305 initial value 122.939734 iter 10 value 117.892293 iter 20 value 112.589370 final value 112.464600 converged svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Sun Jul 21 22:26:50 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 17.356 1.203 25.112
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 17.809 | 0.609 | 18.430 | |
FreqInteractors | 0.080 | 0.004 | 0.084 | |
calculateAAC | 0.014 | 0.002 | 0.017 | |
calculateAutocor | 0.136 | 0.017 | 0.154 | |
calculateCTDC | 0.027 | 0.001 | 0.028 | |
calculateCTDD | 0.179 | 0.008 | 0.187 | |
calculateCTDT | 0.080 | 0.003 | 0.084 | |
calculateCTriad | 0.144 | 0.012 | 0.156 | |
calculateDC | 0.031 | 0.003 | 0.033 | |
calculateF | 0.096 | 0.004 | 0.099 | |
calculateKSAAP | 0.031 | 0.004 | 0.035 | |
calculateQD_Sm | 0.639 | 0.050 | 0.688 | |
calculateTC | 0.564 | 0.054 | 0.618 | |
calculateTC_Sm | 0.109 | 0.006 | 0.115 | |
corr_plot | 17.730 | 0.551 | 18.288 | |
enrichfindP | 0.168 | 0.029 | 9.134 | |
enrichfind_hp | 0.023 | 0.004 | 0.996 | |
enrichplot | 0.118 | 0.003 | 0.120 | |
filter_missing_values | 0.001 | 0.000 | 0.000 | |
getFASTA | 0.028 | 0.005 | 3.418 | |
getHPI | 0 | 0 | 0 | |
get_negativePPI | 0.000 | 0.000 | 0.001 | |
get_positivePPI | 0.001 | 0.000 | 0.000 | |
impute_missing_data | 0.000 | 0.000 | 0.001 | |
plotPPI | 0.025 | 0.001 | 0.025 | |
pred_ensembel | 6.032 | 0.505 | 4.537 | |
var_imp | 18.657 | 0.611 | 19.279 | |