Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-27 11:43 -0400 (Tue, 27 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4415 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 968/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.11.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.11.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.11.0.tar.gz |
StartedAt: 2024-08-26 21:08:35 -0400 (Mon, 26 Aug 2024) |
EndedAt: 2024-08-26 21:13:38 -0400 (Mon, 26 Aug 2024) |
EllapsedTime: 303.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/HPiP.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.11.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 36.851 1.842 39.005 FSmethod 35.159 1.640 37.083 corr_plot 34.385 1.689 36.300 pred_ensembel 14.509 0.580 11.110 enrichfindP 0.497 0.059 7.667 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 99.722268 iter 10 value 94.509190 iter 20 value 94.482609 final value 94.482481 converged Fitting Repeat 2 # weights: 103 initial value 105.297491 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 108.111598 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 98.661162 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 100.161215 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 96.338237 final value 94.467391 converged Fitting Repeat 2 # weights: 305 initial value 101.079415 iter 10 value 94.467230 iter 20 value 94.467038 final value 94.467034 converged Fitting Repeat 3 # weights: 305 initial value 103.440668 iter 10 value 94.470325 final value 94.467391 converged Fitting Repeat 4 # weights: 305 initial value 102.906126 iter 10 value 94.484211 iter 10 value 94.484211 iter 10 value 94.484211 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 99.270085 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 94.886910 iter 10 value 94.452257 final value 94.301587 converged Fitting Repeat 2 # weights: 507 initial value 100.697838 final value 94.467391 converged Fitting Repeat 3 # weights: 507 initial value 101.427243 iter 10 value 94.453333 iter 10 value 94.453333 iter 10 value 94.453333 final value 94.453333 converged Fitting Repeat 4 # weights: 507 initial value 135.731249 iter 10 value 93.675217 final value 93.674286 converged Fitting Repeat 5 # weights: 507 initial value 111.684449 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 101.587519 iter 10 value 94.315256 iter 20 value 89.146468 iter 30 value 85.486929 iter 40 value 84.098420 iter 50 value 82.397650 iter 60 value 82.231732 iter 70 value 82.186394 iter 70 value 82.186393 iter 70 value 82.186393 final value 82.186393 converged Fitting Repeat 2 # weights: 103 initial value 97.004924 iter 10 value 93.805335 iter 20 value 89.783091 iter 30 value 84.445121 iter 40 value 83.742685 iter 50 value 83.466877 iter 60 value 82.460897 iter 70 value 82.192629 iter 80 value 82.084539 final value 82.084023 converged Fitting Repeat 3 # weights: 103 initial value 110.326282 iter 10 value 94.475673 iter 20 value 94.279570 iter 30 value 88.049070 iter 40 value 87.116291 iter 50 value 86.393924 iter 60 value 83.596130 iter 70 value 83.509508 iter 80 value 83.322599 iter 90 value 82.600619 iter 100 value 82.508102 final value 82.508102 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 96.810901 iter 10 value 94.508734 iter 20 value 92.220236 iter 30 value 91.257658 iter 40 value 88.125765 iter 50 value 83.343982 iter 60 value 82.527294 iter 70 value 82.464946 iter 80 value 82.207479 final value 82.186393 converged Fitting Repeat 5 # weights: 103 initial value 97.094784 iter 10 value 94.255787 iter 20 value 85.976014 iter 30 value 84.906744 iter 40 value 83.575028 iter 50 value 83.289433 iter 60 value 82.461767 iter 70 value 82.356341 final value 82.356338 converged Fitting Repeat 1 # weights: 305 initial value 116.123914 iter 10 value 94.388063 iter 20 value 85.288430 iter 30 value 81.944876 iter 40 value 79.830061 iter 50 value 79.544420 iter 60 value 79.522914 iter 70 value 79.437342 iter 80 value 79.401239 iter 90 value 79.357900 iter 100 value 79.104389 final value 79.104389 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 103.910821 iter 10 value 93.852310 iter 20 value 84.553842 iter 30 value 83.548655 iter 40 value 82.298241 iter 50 value 82.094494 iter 60 value 81.708919 iter 70 value 81.209481 iter 80 value 81.041759 iter 90 value 81.034045 iter 100 value 81.002872 final value 81.002872 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 113.018593 iter 10 value 94.458569 iter 20 value 86.934567 iter 30 value 83.582891 iter 40 value 82.749069 iter 50 value 82.717790 iter 60 value 82.524024 iter 70 value 82.344113 iter 80 value 82.246430 iter 90 value 82.081786 iter 100 value 81.495107 final value 81.495107 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 105.284105 iter 10 value 94.490923 iter 20 value 94.318814 iter 30 value 87.536504 iter 40 value 83.116494 iter 50 value 81.770722 iter 60 value 80.335800 iter 70 value 79.973829 iter 80 value 79.783690 iter 90 value 79.561098 iter 100 value 79.329257 final value 79.329257 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 109.813955 iter 10 value 94.312885 iter 20 value 87.613299 iter 30 value 85.316227 iter 40 value 84.256179 iter 50 value 83.368988 iter 60 value 82.622453 iter 70 value 81.849174 iter 80 value 81.378828 iter 90 value 81.296158 iter 100 value 81.166186 final value 81.166186 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 129.006399 iter 10 value 95.178826 iter 20 value 93.597163 iter 30 value 92.400224 iter 40 value 91.889818 iter 50 value 85.332555 iter 60 value 84.189438 iter 70 value 83.719601 iter 80 value 81.892403 iter 90 value 80.550226 iter 100 value 80.086792 final value 80.086792 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 110.079739 iter 10 value 94.618313 iter 20 value 83.827383 iter 30 value 82.797158 iter 40 value 82.720866 iter 50 value 81.786894 iter 60 value 80.590703 iter 70 value 79.678301 iter 80 value 79.579320 iter 90 value 79.498599 iter 100 value 79.309617 final value 79.309617 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 122.234103 iter 10 value 94.480277 iter 20 value 83.647299 iter 30 value 82.649752 iter 40 value 82.477362 iter 50 value 82.286596 iter 60 value 82.205879 iter 70 value 82.082118 iter 80 value 81.145358 iter 90 value 80.380931 iter 100 value 79.905812 final value 79.905812 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 103.865353 iter 10 value 96.106598 iter 20 value 92.463361 iter 30 value 85.832538 iter 40 value 82.376624 iter 50 value 82.199359 iter 60 value 82.022848 iter 70 value 81.879635 iter 80 value 81.410097 iter 90 value 80.015851 iter 100 value 79.795577 final value 79.795577 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 108.947827 iter 10 value 93.705744 iter 20 value 85.775371 iter 30 value 85.058058 iter 40 value 80.925563 iter 50 value 80.327545 iter 60 value 79.574721 iter 70 value 79.333038 iter 80 value 79.254412 iter 90 value 79.248498 iter 100 value 79.240665 final value 79.240665 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.777396 iter 10 value 94.469188 iter 20 value 94.467946 iter 30 value 91.442607 iter 40 value 91.233295 iter 50 value 90.868164 final value 90.868053 converged Fitting Repeat 2 # weights: 103 initial value 96.251726 final value 94.485821 converged Fitting Repeat 3 # weights: 103 initial value 94.857441 iter 10 value 94.469053 iter 20 value 94.468412 iter 30 value 94.467437 final value 94.467424 converged Fitting Repeat 4 # weights: 103 initial value 99.111048 final value 94.450101 converged Fitting Repeat 5 # weights: 103 initial value 97.625057 final value 94.485722 converged Fitting Repeat 1 # weights: 305 initial value 97.912204 iter 10 value 94.487777 iter 20 value 93.565772 iter 30 value 82.825728 iter 40 value 82.818597 iter 50 value 82.456764 iter 60 value 81.604875 iter 70 value 78.849810 iter 80 value 78.282929 iter 90 value 77.948884 iter 100 value 77.770857 final value 77.770857 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 98.323159 iter 10 value 94.488995 iter 20 value 94.430296 iter 30 value 85.528930 iter 40 value 81.942698 iter 50 value 81.843816 iter 60 value 81.843470 final value 81.839878 converged Fitting Repeat 3 # weights: 305 initial value 94.726078 iter 10 value 94.472370 iter 20 value 94.467470 iter 30 value 88.306920 iter 40 value 83.481280 iter 50 value 83.282972 iter 60 value 82.481421 iter 70 value 82.129229 iter 80 value 82.124545 iter 90 value 82.112490 iter 100 value 81.601606 final value 81.601606 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 125.389771 iter 10 value 94.473179 iter 20 value 94.467459 iter 30 value 83.883348 iter 40 value 82.813499 iter 50 value 82.811893 iter 60 value 82.811781 iter 60 value 82.811781 iter 60 value 82.811781 final value 82.811781 converged Fitting Repeat 5 # weights: 305 initial value 108.234741 iter 10 value 94.489289 iter 20 value 94.469486 iter 30 value 94.467503 iter 40 value 93.726363 iter 50 value 89.982260 iter 60 value 84.540580 iter 70 value 84.362524 iter 80 value 84.324268 iter 90 value 84.324080 iter 100 value 83.719262 final value 83.719262 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 96.561267 iter 10 value 94.475447 iter 20 value 94.473609 iter 30 value 94.470703 iter 40 value 93.708356 iter 50 value 93.677423 iter 60 value 89.009947 iter 70 value 86.831076 iter 80 value 85.799434 iter 90 value 85.791045 iter 100 value 84.083858 final value 84.083858 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 108.055123 iter 10 value 94.421469 iter 20 value 94.416675 iter 30 value 82.324464 iter 40 value 81.953350 iter 50 value 81.397679 iter 60 value 81.035545 final value 81.035543 converged Fitting Repeat 3 # weights: 507 initial value 107.578284 iter 10 value 94.444185 iter 20 value 94.436204 iter 30 value 89.651949 iter 40 value 85.087038 iter 50 value 83.813067 iter 60 value 83.742999 iter 70 value 83.248076 iter 80 value 82.968488 iter 90 value 82.809806 iter 100 value 82.804275 final value 82.804275 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 102.206393 iter 10 value 94.492494 iter 20 value 94.480615 final value 94.467496 converged Fitting Repeat 5 # weights: 507 initial value 132.863651 iter 10 value 91.473895 iter 20 value 91.444071 iter 30 value 91.375536 iter 40 value 91.369782 iter 50 value 91.298370 iter 60 value 90.870473 final value 90.799645 converged Fitting Repeat 1 # weights: 103 initial value 94.315395 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 94.959942 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 94.946043 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 95.401292 iter 10 value 92.962142 final value 92.945355 converged Fitting Repeat 5 # weights: 103 initial value 95.098755 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 95.906633 iter 10 value 92.945355 iter 20 value 86.357437 iter 30 value 77.961537 iter 40 value 73.504390 iter 50 value 73.477792 final value 73.477709 converged Fitting Repeat 2 # weights: 305 initial value 104.016713 iter 10 value 92.862806 final value 92.690941 converged Fitting Repeat 3 # weights: 305 initial value 94.758577 iter 10 value 92.530187 final value 92.529794 converged Fitting Repeat 4 # weights: 305 initial value 104.457120 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 109.587477 iter 10 value 92.563130 final value 92.563128 converged Fitting Repeat 1 # weights: 507 initial value 100.911926 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 108.235462 final value 94.052910 converged Fitting Repeat 3 # weights: 507 initial value 134.400257 iter 10 value 85.057275 iter 20 value 82.531979 iter 30 value 82.421720 iter 40 value 82.420778 final value 82.420447 converged Fitting Repeat 4 # weights: 507 initial value 115.379517 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 122.879833 final value 94.052874 converged Fitting Repeat 1 # weights: 103 initial value 102.663025 iter 10 value 93.487258 iter 20 value 88.292917 iter 30 value 80.401004 iter 40 value 79.784900 iter 50 value 79.246616 iter 60 value 78.623590 iter 70 value 78.605574 final value 78.605571 converged Fitting Repeat 2 # weights: 103 initial value 100.208291 iter 10 value 94.003616 iter 20 value 93.479928 iter 30 value 93.413467 iter 40 value 84.512791 iter 50 value 83.407830 iter 60 value 82.481638 iter 70 value 81.405621 iter 80 value 81.356414 iter 90 value 81.281595 iter 100 value 81.275448 final value 81.275448 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 113.916603 iter 10 value 97.895655 iter 20 value 94.054592 iter 30 value 93.083187 iter 40 value 92.749102 iter 50 value 87.727975 iter 60 value 85.990012 iter 70 value 81.933197 iter 80 value 80.799586 iter 90 value 78.931928 iter 100 value 78.658188 final value 78.658188 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 106.303630 iter 10 value 94.081255 iter 20 value 94.054525 iter 30 value 93.209633 iter 40 value 93.089074 iter 50 value 92.781096 iter 60 value 92.619468 iter 70 value 87.346120 iter 80 value 85.566926 iter 90 value 84.523541 iter 100 value 84.106852 final value 84.106852 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 102.237266 iter 10 value 94.296055 iter 20 value 94.062512 iter 30 value 94.041204 iter 40 value 93.073726 iter 50 value 92.715792 iter 60 value 90.813158 iter 70 value 88.024059 iter 80 value 87.228904 iter 90 value 84.817630 iter 100 value 76.256431 final value 76.256431 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 111.939541 iter 10 value 94.124243 iter 20 value 93.444580 iter 30 value 90.164321 iter 40 value 86.549884 iter 50 value 85.277818 iter 60 value 80.942398 iter 70 value 80.162786 iter 80 value 78.495685 iter 90 value 78.304994 iter 100 value 76.707998 final value 76.707998 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 106.704196 iter 10 value 93.882825 iter 20 value 86.556517 iter 30 value 84.914973 iter 40 value 82.619970 iter 50 value 82.030825 iter 60 value 81.949762 iter 70 value 81.656424 iter 80 value 81.256630 iter 90 value 80.758391 iter 100 value 77.739936 final value 77.739936 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.766313 iter 10 value 93.313494 iter 20 value 93.082316 iter 30 value 89.912078 iter 40 value 78.564831 iter 50 value 77.597601 iter 60 value 76.808113 iter 70 value 76.676828 iter 80 value 76.278284 iter 90 value 75.890587 iter 100 value 75.167091 final value 75.167091 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 99.871919 iter 10 value 93.296792 iter 20 value 91.272309 iter 30 value 86.967780 iter 40 value 78.915359 iter 50 value 76.541331 iter 60 value 75.538239 iter 70 value 75.479854 iter 80 value 75.292258 iter 90 value 74.997240 iter 100 value 74.839464 final value 74.839464 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 99.437897 iter 10 value 94.458538 iter 20 value 84.178524 iter 30 value 81.469600 iter 40 value 78.584614 iter 50 value 77.768209 iter 60 value 76.981862 iter 70 value 75.142859 iter 80 value 74.415836 iter 90 value 74.301705 iter 100 value 74.167188 final value 74.167188 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 109.145247 iter 10 value 93.601336 iter 20 value 81.723708 iter 30 value 76.114430 iter 40 value 75.065955 iter 50 value 74.629310 iter 60 value 74.416669 iter 70 value 74.007981 iter 80 value 73.883166 iter 90 value 73.858431 iter 100 value 73.793966 final value 73.793966 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 111.034660 iter 10 value 94.392614 iter 20 value 82.394822 iter 30 value 77.915722 iter 40 value 75.633135 iter 50 value 75.539347 iter 60 value 75.459901 iter 70 value 75.318139 iter 80 value 74.949702 iter 90 value 74.752192 iter 100 value 74.714360 final value 74.714360 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 115.762054 iter 10 value 93.999880 iter 20 value 93.478817 iter 30 value 92.640556 iter 40 value 86.535278 iter 50 value 80.998416 iter 60 value 78.736936 iter 70 value 77.900221 iter 80 value 76.664501 iter 90 value 76.140002 iter 100 value 75.354004 final value 75.354004 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 125.811228 iter 10 value 93.119693 iter 20 value 88.558763 iter 30 value 86.261943 iter 40 value 79.670417 iter 50 value 77.928679 iter 60 value 77.118458 iter 70 value 76.318922 iter 80 value 75.901708 iter 90 value 75.821007 iter 100 value 75.404038 final value 75.404038 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 107.839923 iter 10 value 93.943473 iter 20 value 86.536716 iter 30 value 80.052161 iter 40 value 78.602607 iter 50 value 77.462827 iter 60 value 76.001459 iter 70 value 75.102696 iter 80 value 74.683666 iter 90 value 74.606372 iter 100 value 74.591318 final value 74.591318 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 94.712349 final value 94.054564 converged Fitting Repeat 2 # weights: 103 initial value 99.443697 final value 94.054510 converged Fitting Repeat 3 # weights: 103 initial value 95.123380 final value 94.054877 converged Fitting Repeat 4 # weights: 103 initial value 113.697434 final value 94.054288 converged Fitting Repeat 5 # weights: 103 initial value 101.188051 final value 94.054777 converged Fitting Repeat 1 # weights: 305 initial value 95.842044 iter 10 value 92.950689 iter 20 value 92.946946 iter 30 value 90.663286 iter 40 value 90.461019 iter 50 value 90.460083 iter 60 value 90.430775 iter 70 value 80.038039 iter 80 value 78.470411 iter 90 value 78.343222 iter 100 value 78.297125 final value 78.297125 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 116.643269 iter 10 value 94.057632 iter 20 value 93.765306 iter 30 value 89.118143 iter 40 value 88.694830 iter 50 value 88.634303 iter 60 value 88.633885 iter 70 value 88.631715 iter 80 value 88.000609 iter 90 value 79.534442 iter 100 value 76.566951 final value 76.566951 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 114.829754 iter 10 value 94.057960 iter 20 value 94.050937 iter 30 value 92.506958 final value 92.459029 converged Fitting Repeat 4 # weights: 305 initial value 107.828043 iter 10 value 94.058201 iter 20 value 93.596407 iter 30 value 81.385558 iter 40 value 80.627831 iter 50 value 80.625580 iter 60 value 80.623403 iter 70 value 80.617295 iter 80 value 78.110488 iter 90 value 76.743268 iter 100 value 75.743552 final value 75.743552 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 118.434318 iter 10 value 94.063528 iter 20 value 93.993769 iter 30 value 90.751758 iter 40 value 86.347966 iter 50 value 86.342816 iter 60 value 86.117841 iter 70 value 86.100002 iter 80 value 84.919557 iter 90 value 84.334354 iter 100 value 77.920547 final value 77.920547 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 109.484855 iter 10 value 92.956539 iter 20 value 92.953611 iter 30 value 92.837802 iter 40 value 84.226991 iter 50 value 84.223951 iter 60 value 82.245346 iter 70 value 78.060272 iter 80 value 74.981463 iter 90 value 72.750901 iter 100 value 72.589630 final value 72.589630 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 106.947815 iter 10 value 92.991464 iter 20 value 92.954160 iter 30 value 92.950067 final value 92.946172 converged Fitting Repeat 3 # weights: 507 initial value 96.393221 iter 10 value 87.669995 iter 20 value 77.473583 iter 30 value 77.426048 iter 40 value 75.914700 iter 50 value 74.500656 iter 60 value 74.495345 iter 70 value 73.922409 iter 80 value 73.869261 iter 90 value 73.862401 final value 73.856548 converged Fitting Repeat 4 # weights: 507 initial value 105.172879 iter 10 value 93.121718 iter 20 value 92.433890 iter 30 value 92.433279 iter 40 value 91.327900 iter 50 value 85.459932 iter 60 value 81.854640 iter 70 value 78.206038 iter 80 value 77.478971 iter 90 value 77.470924 iter 100 value 77.470752 final value 77.470752 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 127.231786 iter 10 value 94.061259 final value 94.053861 converged Fitting Repeat 1 # weights: 103 initial value 105.054497 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 101.769781 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 102.928195 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 101.051856 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 95.205608 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 110.803957 final value 94.032967 converged Fitting Repeat 2 # weights: 305 initial value 121.873960 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 99.724172 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 108.939346 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 103.285043 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 100.950450 iter 10 value 94.032967 iter 10 value 94.032967 iter 10 value 94.032967 final value 94.032967 converged Fitting Repeat 2 # weights: 507 initial value 109.052506 iter 10 value 93.188026 iter 20 value 89.504113 final value 89.480427 converged Fitting Repeat 3 # weights: 507 initial value 124.856453 iter 10 value 94.035088 iter 10 value 94.035088 iter 10 value 94.035088 final value 94.035088 converged Fitting Repeat 4 # weights: 507 initial value 94.614518 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 95.929271 final value 94.032967 converged Fitting Repeat 1 # weights: 103 initial value 96.595029 iter 10 value 94.034602 iter 20 value 92.503372 iter 30 value 91.362535 iter 40 value 87.309896 iter 50 value 86.362121 iter 60 value 85.708706 iter 70 value 85.351617 iter 80 value 85.285895 iter 90 value 85.265667 final value 85.259240 converged Fitting Repeat 2 # weights: 103 initial value 98.496693 iter 10 value 94.031236 iter 20 value 89.517134 iter 30 value 88.744084 iter 40 value 88.484723 iter 50 value 88.049255 iter 60 value 86.027199 iter 70 value 85.413939 iter 80 value 85.275822 iter 90 value 85.262811 final value 85.259240 converged Fitting Repeat 3 # weights: 103 initial value 97.410615 iter 10 value 91.501987 iter 20 value 87.187904 iter 30 value 85.869584 iter 40 value 85.189390 iter 50 value 84.257670 iter 60 value 84.033838 iter 70 value 83.871183 iter 80 value 83.755307 final value 83.752556 converged Fitting Repeat 4 # weights: 103 initial value 101.197991 iter 10 value 93.783434 iter 20 value 87.734360 iter 30 value 86.461179 iter 40 value 86.068901 iter 50 value 85.881585 final value 85.879011 converged Fitting Repeat 5 # weights: 103 initial value 99.456688 iter 10 value 94.076565 iter 20 value 94.039455 iter 30 value 93.120516 iter 40 value 89.804589 iter 50 value 87.685652 iter 60 value 87.220989 iter 70 value 86.581763 iter 80 value 85.624815 iter 90 value 84.801812 iter 100 value 84.289006 final value 84.289006 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 101.617831 iter 10 value 94.079595 iter 20 value 89.679018 iter 30 value 88.876274 iter 40 value 88.468963 iter 50 value 86.427671 iter 60 value 84.778504 iter 70 value 84.155231 iter 80 value 84.053765 iter 90 value 83.872722 iter 100 value 83.650489 final value 83.650489 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 106.225653 iter 10 value 94.077548 iter 20 value 93.217029 iter 30 value 87.965860 iter 40 value 85.841040 iter 50 value 84.505380 iter 60 value 84.376875 iter 70 value 84.319865 iter 80 value 84.258662 iter 90 value 84.204363 iter 100 value 83.940190 final value 83.940190 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.459353 iter 10 value 93.605613 iter 20 value 88.939084 iter 30 value 85.976366 iter 40 value 84.931695 iter 50 value 84.262003 iter 60 value 84.012559 iter 70 value 83.975656 iter 80 value 83.890953 iter 90 value 83.874552 iter 100 value 83.847694 final value 83.847694 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 111.972731 iter 10 value 94.134054 iter 20 value 93.946490 iter 30 value 92.123518 iter 40 value 88.112381 iter 50 value 86.762926 iter 60 value 85.549134 iter 70 value 85.172745 iter 80 value 84.258873 iter 90 value 83.203247 iter 100 value 82.644720 final value 82.644720 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 107.161552 iter 10 value 93.852258 iter 20 value 90.459141 iter 30 value 88.736511 iter 40 value 87.095114 iter 50 value 86.540695 iter 60 value 85.017424 iter 70 value 84.345857 iter 80 value 84.184154 iter 90 value 84.019498 iter 100 value 83.803491 final value 83.803491 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 106.416596 iter 10 value 93.666090 iter 20 value 88.548548 iter 30 value 85.964556 iter 40 value 85.234972 iter 50 value 84.198963 iter 60 value 83.698013 iter 70 value 83.361000 iter 80 value 83.199096 iter 90 value 83.178027 iter 100 value 83.071976 final value 83.071976 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 103.508477 iter 10 value 97.047533 iter 20 value 95.894277 iter 30 value 92.740798 iter 40 value 88.508361 iter 50 value 88.103146 iter 60 value 87.715035 iter 70 value 86.387151 iter 80 value 86.072893 iter 90 value 85.642550 iter 100 value 84.824878 final value 84.824878 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 122.418649 iter 10 value 94.748627 iter 20 value 93.924489 iter 30 value 91.336579 iter 40 value 87.426911 iter 50 value 84.824485 iter 60 value 84.687876 iter 70 value 84.090261 iter 80 value 83.683434 iter 90 value 83.516232 iter 100 value 83.260098 final value 83.260098 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 120.236223 iter 10 value 93.852188 iter 20 value 87.377946 iter 30 value 86.648565 iter 40 value 84.342438 iter 50 value 83.461661 iter 60 value 83.254505 iter 70 value 83.118242 iter 80 value 82.931916 iter 90 value 82.673507 iter 100 value 82.598118 final value 82.598118 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 107.185071 iter 10 value 96.085686 iter 20 value 88.957326 iter 30 value 84.557527 iter 40 value 83.859473 iter 50 value 83.488567 iter 60 value 83.277621 iter 70 value 83.213257 iter 80 value 83.162929 iter 90 value 83.031174 iter 100 value 82.754428 final value 82.754428 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 96.880771 final value 94.054643 converged Fitting Repeat 2 # weights: 103 initial value 99.662550 iter 10 value 94.054825 iter 20 value 94.053029 final value 94.053014 converged Fitting Repeat 3 # weights: 103 initial value 95.774295 final value 94.054672 converged Fitting Repeat 4 # weights: 103 initial value 95.515528 final value 94.054447 converged Fitting Repeat 5 # weights: 103 initial value 99.591416 final value 94.054607 converged Fitting Repeat 1 # weights: 305 initial value 95.911040 iter 10 value 91.983898 iter 20 value 88.647872 iter 30 value 88.182602 iter 40 value 87.987761 iter 50 value 87.335564 iter 60 value 87.135835 iter 70 value 87.062121 iter 80 value 86.981035 iter 90 value 86.895139 iter 100 value 86.774279 final value 86.774279 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 97.507853 iter 10 value 94.057253 iter 20 value 93.998429 iter 30 value 92.469024 iter 40 value 92.379391 final value 92.379387 converged Fitting Repeat 3 # weights: 305 initial value 105.302098 iter 10 value 94.057717 iter 20 value 93.791926 iter 30 value 90.460164 final value 90.460160 converged Fitting Repeat 4 # weights: 305 initial value 107.098679 iter 10 value 94.057280 iter 20 value 94.026115 iter 30 value 93.185412 iter 40 value 92.785106 iter 50 value 89.627442 iter 60 value 88.889859 iter 70 value 87.049312 iter 80 value 86.927575 iter 90 value 86.677104 iter 100 value 86.584046 final value 86.584046 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 96.861118 iter 10 value 94.057217 iter 20 value 94.051627 iter 30 value 89.263817 iter 40 value 88.454354 iter 50 value 88.358930 iter 60 value 88.190292 iter 70 value 88.146274 iter 80 value 88.139292 iter 90 value 88.132243 final value 88.132103 converged Fitting Repeat 1 # weights: 507 initial value 107.810114 iter 10 value 94.041688 iter 20 value 94.038665 iter 30 value 94.034171 iter 40 value 94.017048 iter 50 value 92.353878 iter 60 value 86.783491 iter 70 value 86.777184 final value 86.776936 converged Fitting Repeat 2 # weights: 507 initial value 109.372880 iter 10 value 94.058364 iter 20 value 94.041680 iter 30 value 94.040633 iter 40 value 94.034324 iter 50 value 93.550076 iter 60 value 88.914930 iter 70 value 85.350273 iter 80 value 83.834094 iter 90 value 82.612809 iter 100 value 81.948288 final value 81.948288 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 106.665361 iter 10 value 93.857102 iter 20 value 93.812804 iter 30 value 93.811569 iter 40 value 93.799121 iter 50 value 92.140648 iter 60 value 91.478886 iter 70 value 91.478539 iter 80 value 91.478306 iter 90 value 91.449734 iter 100 value 91.404435 final value 91.404435 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 107.817979 iter 10 value 94.040398 iter 20 value 92.717690 iter 30 value 92.380756 iter 40 value 92.007445 iter 50 value 92.002811 iter 60 value 91.993290 iter 70 value 91.935551 final value 91.935386 converged Fitting Repeat 5 # weights: 507 initial value 99.129559 iter 10 value 91.253092 iter 20 value 87.801194 iter 30 value 87.644517 iter 40 value 87.517311 iter 50 value 87.453124 iter 60 value 87.341090 iter 70 value 87.092343 iter 80 value 86.900178 iter 90 value 85.300825 iter 100 value 84.358729 final value 84.358729 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 109.158613 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 107.189802 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 102.376817 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 98.364358 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 97.307840 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 116.543845 final value 94.476190 converged Fitting Repeat 2 # weights: 305 initial value 97.289972 final value 94.354396 converged Fitting Repeat 3 # weights: 305 initial value 102.423111 final value 94.147186 converged Fitting Repeat 4 # weights: 305 initial value 108.461762 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 99.150261 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 109.479318 iter 10 value 94.354920 final value 94.354397 converged Fitting Repeat 2 # weights: 507 initial value 112.196763 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 94.950087 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 126.966267 iter 10 value 94.354396 iter 10 value 94.354396 iter 10 value 94.354396 final value 94.354396 converged Fitting Repeat 5 # weights: 507 initial value 103.304616 iter 10 value 92.770118 iter 20 value 90.355328 iter 30 value 90.186126 iter 40 value 89.769658 final value 89.769598 converged Fitting Repeat 1 # weights: 103 initial value 101.562843 iter 10 value 94.140852 iter 20 value 89.089102 iter 30 value 87.263123 iter 40 value 86.490694 iter 50 value 86.407406 iter 60 value 86.320398 iter 70 value 86.308401 final value 86.307926 converged Fitting Repeat 2 # weights: 103 initial value 96.802936 iter 10 value 94.490929 iter 20 value 94.454544 iter 30 value 93.513353 iter 40 value 93.228579 iter 50 value 87.764258 iter 60 value 87.374349 iter 70 value 86.994413 iter 80 value 86.747722 iter 90 value 85.937031 iter 100 value 84.727733 final value 84.727733 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 107.134252 iter 10 value 94.488413 iter 20 value 94.486749 iter 30 value 94.476597 iter 40 value 93.953572 iter 50 value 89.756718 iter 60 value 89.283175 iter 70 value 86.688966 iter 80 value 85.611377 iter 90 value 85.037139 iter 100 value 84.955917 final value 84.955917 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 100.352633 iter 10 value 94.489727 iter 20 value 90.366878 iter 30 value 88.030535 iter 40 value 87.346638 iter 50 value 87.255121 iter 60 value 85.863229 iter 70 value 85.834862 final value 85.834860 converged Fitting Repeat 5 # weights: 103 initial value 97.021077 iter 10 value 94.498265 iter 20 value 94.471805 iter 30 value 91.984870 iter 40 value 87.468728 iter 50 value 86.617072 iter 60 value 86.339614 iter 70 value 86.229655 iter 80 value 86.027163 iter 90 value 85.217723 iter 100 value 84.905381 final value 84.905381 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 106.442131 iter 10 value 94.562380 iter 20 value 92.613823 iter 30 value 89.618131 iter 40 value 89.179572 iter 50 value 87.883396 iter 60 value 86.335495 iter 70 value 86.159883 iter 80 value 85.845969 iter 90 value 83.968906 iter 100 value 83.713131 final value 83.713131 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.120779 iter 10 value 92.119041 iter 20 value 89.497409 iter 30 value 87.656751 iter 40 value 85.084081 iter 50 value 84.613604 iter 60 value 84.489406 iter 70 value 84.379925 iter 80 value 83.881154 iter 90 value 83.428451 iter 100 value 83.102468 final value 83.102468 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 107.298859 iter 10 value 94.377013 iter 20 value 90.921747 iter 30 value 87.996557 iter 40 value 87.120118 iter 50 value 86.838545 iter 60 value 86.576127 iter 70 value 85.402854 iter 80 value 84.892938 iter 90 value 84.492375 iter 100 value 83.244521 final value 83.244521 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 103.733613 iter 10 value 94.409212 iter 20 value 92.555695 iter 30 value 90.683950 iter 40 value 87.238321 iter 50 value 85.436361 iter 60 value 84.679486 iter 70 value 83.748389 iter 80 value 83.441770 iter 90 value 83.367148 iter 100 value 83.135942 final value 83.135942 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 104.291099 iter 10 value 94.758789 iter 20 value 94.522892 iter 30 value 94.371349 iter 40 value 93.898249 iter 50 value 87.308893 iter 60 value 87.106278 iter 70 value 87.011198 iter 80 value 86.541099 iter 90 value 85.575084 iter 100 value 85.118229 final value 85.118229 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 107.044831 iter 10 value 94.531754 iter 20 value 93.567585 iter 30 value 90.366611 iter 40 value 87.351316 iter 50 value 86.383117 iter 60 value 84.711941 iter 70 value 83.625353 iter 80 value 83.368936 iter 90 value 83.268475 iter 100 value 83.143645 final value 83.143645 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 130.763908 iter 10 value 93.177240 iter 20 value 89.035756 iter 30 value 87.062409 iter 40 value 85.889839 iter 50 value 84.707597 iter 60 value 83.227022 iter 70 value 82.985172 iter 80 value 82.543337 iter 90 value 82.469057 iter 100 value 82.435014 final value 82.435014 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 114.911504 iter 10 value 99.899485 iter 20 value 92.826265 iter 30 value 92.582790 iter 40 value 86.824955 iter 50 value 85.920400 iter 60 value 85.581539 iter 70 value 84.954797 iter 80 value 84.887446 iter 90 value 84.767317 iter 100 value 84.364696 final value 84.364696 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 141.510158 iter 10 value 96.258983 iter 20 value 89.303220 iter 30 value 87.635185 iter 40 value 85.880310 iter 50 value 85.185797 iter 60 value 84.970368 iter 70 value 84.640189 iter 80 value 83.935245 iter 90 value 82.998117 iter 100 value 82.683183 final value 82.683183 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 107.026605 iter 10 value 94.509849 iter 20 value 88.363392 iter 30 value 85.478313 iter 40 value 84.737064 iter 50 value 83.947975 iter 60 value 82.852685 iter 70 value 82.738976 iter 80 value 82.479092 iter 90 value 82.255929 iter 100 value 82.151233 final value 82.151233 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 106.031396 final value 94.485831 converged Fitting Repeat 2 # weights: 103 initial value 99.483812 iter 10 value 94.485920 iter 20 value 90.020648 iter 30 value 87.748168 final value 87.747458 converged Fitting Repeat 3 # weights: 103 initial value 97.043870 final value 94.485979 converged Fitting Repeat 4 # weights: 103 initial value 99.610788 iter 10 value 94.485781 iter 20 value 94.484242 final value 94.484216 converged Fitting Repeat 5 # weights: 103 initial value 95.300072 final value 94.485977 converged Fitting Repeat 1 # weights: 305 initial value 98.108103 iter 10 value 94.487716 iter 20 value 93.784744 iter 30 value 88.233337 iter 40 value 87.961148 iter 50 value 87.273242 iter 60 value 86.542983 iter 70 value 86.437798 iter 80 value 86.431207 iter 90 value 86.331049 iter 100 value 86.075994 final value 86.075994 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 106.000463 iter 10 value 94.489192 iter 20 value 94.484252 final value 94.484216 converged Fitting Repeat 3 # weights: 305 initial value 95.354326 iter 10 value 93.819726 iter 20 value 93.801956 iter 30 value 93.799324 iter 40 value 93.682675 iter 50 value 88.367337 iter 60 value 86.751963 iter 70 value 86.561242 iter 80 value 86.557440 iter 90 value 86.551084 iter 100 value 86.316643 final value 86.316643 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 105.225016 iter 10 value 94.488569 iter 20 value 94.485120 final value 94.485114 converged Fitting Repeat 5 # weights: 305 initial value 96.320996 iter 10 value 94.491381 iter 20 value 94.484237 final value 94.484232 converged Fitting Repeat 1 # weights: 507 initial value 105.965209 iter 10 value 88.414442 iter 20 value 86.070700 iter 30 value 85.001332 iter 40 value 84.965818 iter 50 value 84.933951 iter 60 value 84.929019 iter 70 value 84.926317 final value 84.925646 converged Fitting Repeat 2 # weights: 507 initial value 100.004421 iter 10 value 90.161642 iter 20 value 89.949274 iter 30 value 89.945268 iter 40 value 89.844814 iter 50 value 88.015358 iter 60 value 86.068146 iter 70 value 85.793550 iter 80 value 85.776584 iter 90 value 85.776311 iter 100 value 85.774370 final value 85.774370 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 104.596482 iter 10 value 93.654605 iter 20 value 93.576230 iter 30 value 93.573612 iter 40 value 93.571547 iter 50 value 93.571250 iter 60 value 92.745480 iter 70 value 88.355661 iter 80 value 88.347794 iter 90 value 88.193831 iter 100 value 87.990437 final value 87.990437 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 100.547222 iter 10 value 94.362652 iter 20 value 94.355956 iter 30 value 94.355716 iter 40 value 94.352004 iter 50 value 91.307909 iter 60 value 87.853819 iter 70 value 87.640461 iter 80 value 87.636997 final value 87.635593 converged Fitting Repeat 5 # weights: 507 initial value 118.682104 iter 10 value 94.362858 iter 20 value 94.354991 iter 30 value 94.161712 iter 40 value 92.058089 iter 50 value 88.049731 iter 60 value 86.328378 iter 70 value 84.791031 iter 80 value 82.975127 iter 90 value 81.639817 iter 100 value 81.623719 final value 81.623719 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 96.211020 final value 93.783647 converged Fitting Repeat 2 # weights: 103 initial value 97.975576 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 95.143447 final value 94.443243 converged Fitting Repeat 4 # weights: 103 initial value 104.292582 final value 94.443243 converged Fitting Repeat 5 # weights: 103 initial value 97.342473 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 110.317377 iter 10 value 94.347383 iter 20 value 94.120680 iter 30 value 93.884007 iter 40 value 93.883345 final value 93.883342 converged Fitting Repeat 2 # weights: 305 initial value 99.928152 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 97.264385 final value 94.484212 converged Fitting Repeat 4 # weights: 305 initial value 108.786978 final value 94.443243 converged Fitting Repeat 5 # weights: 305 initial value 98.449929 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 110.632876 iter 10 value 93.722383 final value 93.722222 converged Fitting Repeat 2 # weights: 507 initial value 105.563268 iter 10 value 94.443246 final value 94.443243 converged Fitting Repeat 3 # weights: 507 initial value 137.968089 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 116.372089 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 113.074738 iter 10 value 94.203858 final value 94.144481 converged Fitting Repeat 1 # weights: 103 initial value 103.725427 iter 10 value 94.005963 iter 20 value 93.632667 iter 30 value 85.331943 iter 40 value 84.571523 iter 50 value 84.255597 iter 60 value 84.228317 iter 70 value 83.696710 final value 83.694483 converged Fitting Repeat 2 # weights: 103 initial value 100.459061 iter 10 value 94.488699 iter 20 value 92.540980 iter 30 value 85.461489 iter 40 value 83.595130 iter 50 value 83.342319 iter 60 value 83.202274 iter 70 value 82.404879 iter 80 value 81.400141 iter 90 value 80.940467 iter 100 value 80.822614 final value 80.822614 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 96.612608 iter 10 value 87.902547 iter 20 value 87.555558 iter 30 value 84.665562 iter 40 value 84.513663 iter 50 value 84.012444 iter 60 value 83.702735 final value 83.701541 converged Fitting Repeat 4 # weights: 103 initial value 97.612674 iter 10 value 94.432298 iter 20 value 93.671411 iter 30 value 93.636560 iter 40 value 93.622187 iter 50 value 92.821301 iter 60 value 89.803160 iter 70 value 87.608333 iter 80 value 83.489478 iter 90 value 82.673835 iter 100 value 81.523859 final value 81.523859 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 100.454346 iter 10 value 93.702040 iter 20 value 86.784489 iter 30 value 85.833151 iter 40 value 85.067930 iter 50 value 84.812249 iter 60 value 83.683434 iter 70 value 82.118930 iter 80 value 81.298772 iter 90 value 81.291343 iter 90 value 81.291342 final value 81.291342 converged Fitting Repeat 1 # weights: 305 initial value 101.574395 iter 10 value 94.369620 iter 20 value 89.975961 iter 30 value 83.242249 iter 40 value 82.641460 iter 50 value 82.398452 iter 60 value 80.881371 iter 70 value 80.091098 iter 80 value 79.454396 iter 90 value 79.379515 iter 100 value 79.278909 final value 79.278909 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.777749 iter 10 value 94.716901 iter 20 value 88.839331 iter 30 value 87.748507 iter 40 value 87.365639 iter 50 value 83.086260 iter 60 value 81.575749 iter 70 value 81.060715 iter 80 value 80.793741 iter 90 value 80.177691 iter 100 value 79.905080 final value 79.905080 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 113.061520 iter 10 value 94.489969 iter 20 value 94.220359 iter 30 value 93.648605 iter 40 value 93.440057 iter 50 value 86.849965 iter 60 value 85.979104 iter 70 value 83.485526 iter 80 value 83.244751 iter 90 value 82.587403 iter 100 value 82.144235 final value 82.144235 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 104.590875 iter 10 value 94.340965 iter 20 value 91.163758 iter 30 value 89.378851 iter 40 value 87.537925 final value 87.439852 converged Fitting Repeat 5 # weights: 305 initial value 103.775883 iter 10 value 94.319584 iter 20 value 88.195500 iter 30 value 87.436331 iter 40 value 87.374680 iter 50 value 87.180285 iter 60 value 86.562407 iter 70 value 85.708811 iter 80 value 82.132253 iter 90 value 81.116407 iter 100 value 80.555453 final value 80.555453 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 119.187536 iter 10 value 94.719588 iter 20 value 93.772878 iter 30 value 93.342840 iter 40 value 86.638203 iter 50 value 85.183597 iter 60 value 83.718704 iter 70 value 81.304830 iter 80 value 79.955599 iter 90 value 79.752105 iter 100 value 79.684534 final value 79.684534 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 130.951205 iter 10 value 94.390417 iter 20 value 93.916496 iter 30 value 86.540898 iter 40 value 84.872490 iter 50 value 83.833375 iter 60 value 83.360287 iter 70 value 83.110221 iter 80 value 83.023343 iter 90 value 82.446296 iter 100 value 81.288206 final value 81.288206 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 121.454000 iter 10 value 94.484507 iter 20 value 89.382434 iter 30 value 85.008647 iter 40 value 83.632621 iter 50 value 83.367827 iter 60 value 82.002472 iter 70 value 80.874874 iter 80 value 80.548946 iter 90 value 80.255396 iter 100 value 79.878239 final value 79.878239 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 103.780460 iter 10 value 94.417380 iter 20 value 88.507143 iter 30 value 83.877001 iter 40 value 81.231642 iter 50 value 80.390783 iter 60 value 80.069118 iter 70 value 79.782371 iter 80 value 79.562663 iter 90 value 79.489183 iter 100 value 79.278321 final value 79.278321 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 116.086774 iter 10 value 94.525344 iter 20 value 94.188145 iter 30 value 91.765595 iter 40 value 84.958219 iter 50 value 83.998441 iter 60 value 83.013443 iter 70 value 81.789604 iter 80 value 81.505518 iter 90 value 81.418440 iter 100 value 80.998453 final value 80.998453 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.235029 iter 10 value 94.150053 final value 94.107162 converged Fitting Repeat 2 # weights: 103 initial value 98.346986 iter 10 value 94.486055 final value 94.484235 converged Fitting Repeat 3 # weights: 103 initial value 98.314975 iter 10 value 94.486003 final value 94.484252 converged Fitting Repeat 4 # weights: 103 initial value 96.381884 iter 10 value 94.445344 iter 20 value 94.114560 iter 30 value 93.558608 iter 40 value 93.558513 final value 93.558500 converged Fitting Repeat 5 # weights: 103 initial value 102.530583 final value 94.485756 converged Fitting Repeat 1 # weights: 305 initial value 101.084365 iter 10 value 93.328900 iter 20 value 92.997088 iter 30 value 92.963084 iter 40 value 92.369576 iter 50 value 87.082249 iter 60 value 84.749408 iter 70 value 84.608223 iter 80 value 84.606943 iter 90 value 84.481895 iter 100 value 84.472411 final value 84.472411 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 97.513490 iter 10 value 94.489426 iter 20 value 94.425935 iter 30 value 84.864982 iter 40 value 84.622187 iter 50 value 84.611910 iter 60 value 84.610433 final value 84.610374 converged Fitting Repeat 3 # weights: 305 initial value 118.176031 iter 10 value 94.601010 iter 20 value 93.689110 iter 30 value 84.963642 iter 40 value 83.659201 iter 50 value 80.924122 iter 60 value 79.541380 iter 70 value 79.443110 iter 80 value 79.440074 iter 90 value 79.424539 iter 100 value 79.421929 final value 79.421929 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 98.056882 iter 10 value 94.448387 iter 20 value 94.372518 iter 30 value 84.086542 iter 40 value 83.896817 iter 50 value 83.895088 iter 60 value 83.859985 final value 83.859946 converged Fitting Repeat 5 # weights: 305 initial value 110.178004 iter 10 value 94.487808 iter 20 value 93.999977 iter 30 value 83.459471 final value 83.370979 converged Fitting Repeat 1 # weights: 507 initial value 128.082113 iter 10 value 94.451473 iter 20 value 94.315553 iter 30 value 93.651642 iter 40 value 91.287113 iter 50 value 90.678724 iter 60 value 89.761993 iter 70 value 89.623914 iter 80 value 89.620220 iter 90 value 89.601969 iter 100 value 89.305417 final value 89.305417 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 105.909544 iter 10 value 94.493118 iter 20 value 94.484280 iter 30 value 93.559208 iter 40 value 84.834468 iter 50 value 82.648486 iter 60 value 81.332916 iter 70 value 80.127299 iter 80 value 78.681049 iter 90 value 78.402463 iter 100 value 78.059022 final value 78.059022 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 123.191803 iter 10 value 94.492996 iter 20 value 94.055186 iter 30 value 93.376664 iter 40 value 93.362927 iter 50 value 93.317520 iter 60 value 92.979415 iter 70 value 90.207062 iter 80 value 89.895112 iter 90 value 89.894398 iter 100 value 89.893816 final value 89.893816 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 135.453440 iter 10 value 94.492642 iter 20 value 91.311914 iter 30 value 90.954005 iter 40 value 90.942146 iter 50 value 90.422723 iter 60 value 90.389138 iter 70 value 90.380667 iter 80 value 90.284904 iter 90 value 89.623473 iter 100 value 83.322798 final value 83.322798 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 110.642375 iter 10 value 94.451115 iter 20 value 94.390977 iter 30 value 88.873826 iter 40 value 85.005023 iter 50 value 83.254484 iter 60 value 82.285246 iter 70 value 82.283837 iter 80 value 82.283234 iter 80 value 82.283234 final value 82.283234 converged Fitting Repeat 1 # weights: 305 initial value 127.789793 iter 10 value 117.894739 iter 20 value 117.255651 iter 30 value 117.211023 final value 117.206415 converged Fitting Repeat 2 # weights: 305 initial value 123.498344 iter 10 value 117.895487 iter 20 value 117.823491 iter 30 value 117.406106 iter 40 value 109.356273 iter 50 value 109.328499 iter 60 value 109.239151 iter 70 value 106.734645 iter 80 value 106.707151 iter 90 value 104.811829 iter 100 value 104.262187 final value 104.262187 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 123.761065 iter 10 value 117.895720 iter 20 value 117.760556 iter 30 value 117.758768 iter 30 value 117.758768 iter 30 value 117.758768 final value 117.758768 converged Fitting Repeat 4 # weights: 305 initial value 125.032119 iter 10 value 117.895657 iter 20 value 117.890763 iter 30 value 116.109003 iter 40 value 105.377737 iter 50 value 103.420513 iter 60 value 102.672859 iter 70 value 102.634799 final value 102.634685 converged Fitting Repeat 5 # weights: 305 initial value 132.826651 iter 10 value 117.425735 iter 20 value 117.103297 iter 30 value 117.101185 iter 40 value 117.100400 iter 50 value 117.100237 iter 60 value 117.099485 iter 70 value 116.917175 iter 80 value 116.893266 iter 90 value 116.883640 iter 90 value 116.883639 iter 90 value 116.883639 final value 116.883639 converged svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Mon Aug 26 21:13:29 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 42.301 1.927 42.483
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 35.159 | 1.640 | 37.083 | |
FreqInteractors | 0.274 | 0.015 | 0.291 | |
calculateAAC | 0.040 | 0.007 | 0.047 | |
calculateAutocor | 0.414 | 0.074 | 0.492 | |
calculateCTDC | 0.087 | 0.005 | 0.093 | |
calculateCTDD | 0.677 | 0.025 | 0.707 | |
calculateCTDT | 0.260 | 0.011 | 0.272 | |
calculateCTriad | 0.404 | 0.031 | 0.438 | |
calculateDC | 0.108 | 0.013 | 0.121 | |
calculateF | 0.371 | 0.011 | 0.385 | |
calculateKSAAP | 0.111 | 0.010 | 0.122 | |
calculateQD_Sm | 1.816 | 0.111 | 1.938 | |
calculateTC | 1.894 | 0.179 | 2.083 | |
calculateTC_Sm | 0.285 | 0.018 | 0.303 | |
corr_plot | 34.385 | 1.689 | 36.300 | |
enrichfindP | 0.497 | 0.059 | 7.667 | |
enrichfind_hp | 0.076 | 0.024 | 0.996 | |
enrichplot | 0.459 | 0.009 | 0.471 | |
filter_missing_values | 0.001 | 0.001 | 0.002 | |
getFASTA | 0.070 | 0.013 | 4.001 | |
getHPI | 0.001 | 0.000 | 0.001 | |
get_negativePPI | 0.002 | 0.001 | 0.002 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.001 | 0.000 | 0.002 | |
plotPPI | 0.081 | 0.003 | 0.086 | |
pred_ensembel | 14.509 | 0.580 | 11.110 | |
var_imp | 36.851 | 1.842 | 39.005 | |