Back to Multiple platform build/check report for BioC 3.22:   simplified   long
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2025-11-07 12:01 -0500 (Fri, 07 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4902
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4638
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1430/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MutationalPatterns 3.20.0  (landing page)
Mark van Roosmalen
Snapshot Date: 2025-11-06 13:45 -0500 (Thu, 06 Nov 2025)
git_url: https://git.bioconductor.org/packages/MutationalPatterns
git_branch: RELEASE_3_22
git_last_commit: 25b6359
git_last_commit_date: 2025-10-29 10:35:07 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    ERROR  
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for MutationalPatterns on kjohnson3

To the developers/maintainers of the MutationalPatterns package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MutationalPatterns.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MutationalPatterns
Version: 3.20.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MutationalPatterns
StartedAt: 2025-11-06 17:10:31 -0500 (Thu, 06 Nov 2025)
EndedAt: 2025-11-06 17:11:40 -0500 (Thu, 06 Nov 2025)
EllapsedTime: 69.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MutationalPatterns
###
##############################################################################
##############################################################################


* checking for file ‘MutationalPatterns/DESCRIPTION’ ... OK
* preparing ‘MutationalPatterns’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Introduction_to_MutationalPatterns.Rmd’ using rmarkdown
2025-11-06 17:10:56.992 R[74010:647320260] XType: Using static font registry.

Quitting from Introduction_to_MutationalPatterns.Rmd:535-543 [use_bayesnmf]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ccfindR'
---
Backtrace:
    ▆
 1. └─base::library("ccfindR")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Introduction_to_MutationalPatterns.Rmd' failed with diagnostics:
there is no package called 'ccfindR'
--- failed re-building ‘Introduction_to_MutationalPatterns.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction_to_MutationalPatterns.Rmd’

Error: Vignette re-building failed.
Execution halted