Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:14:38 -0400 (Thu, 12 Apr 2018).
Package 833/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
MethPed 1.6.0 Helena Carén
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: MethPed |
Version: 1.6.0 |
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings MethPed_1.6.0.tar.gz |
StartedAt: 2018-04-12 00:59:06 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 01:02:20 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 193.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MethPed.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings MethPed_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/MethPed.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MethPed/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MethPed’ version ‘1.6.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MethPed’ can be installed ... OK * checking installed package size ... NOTE installed size is 9.9Mb sub-directories of 1Mb or more: R 2.3Mb data 6.7Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 3 marked Latin-1 strings * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed MethPed 78.432 0.168 78.660 plot.methped 26.780 0.024 26.823 summary.methped 25.752 0.048 25.844 probeMis 25.664 0.036 25.718 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.6-bioc/meat/MethPed.Rcheck/00check.log’ for details.
MethPed.Rcheck/00install.out
* installing *source* package ‘MethPed’ ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (MethPed)
MethPed.Rcheck/MethPed-Ex.timings
name | user | system | elapsed | |
MethPed | 78.432 | 0.168 | 78.660 | |
MethPed_900probes | 0.004 | 0.000 | 0.003 | |
MethPed_sample | 1.440 | 0.012 | 1.453 | |
checkNA | 1.484 | 0.016 | 1.499 | |
plot.methped | 26.780 | 0.024 | 26.823 | |
probeMis | 25.664 | 0.036 | 25.718 | |
summary.methped | 25.752 | 0.048 | 25.844 | |