Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:27:36 -0400 (Thu, 12 Apr 2018).
Package 833/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
MethPed 1.6.0 Helena Carén
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: MethPed |
Version: 1.6.0 |
Command: rm -rf MethPed.buildbin-libdir MethPed.Rcheck && mkdir MethPed.buildbin-libdir MethPed.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MethPed.buildbin-libdir MethPed_1.6.0.tar.gz >MethPed.Rcheck\00install.out 2>&1 && cp MethPed.Rcheck\00install.out MethPed-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=MethPed.buildbin-libdir --install="check:MethPed-install.out" --force-multiarch --no-vignettes --timings MethPed_1.6.0.tar.gz |
StartedAt: 2018-04-12 01:19:48 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 01:27:13 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 445.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MethPed.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf MethPed.buildbin-libdir MethPed.Rcheck && mkdir MethPed.buildbin-libdir MethPed.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MethPed.buildbin-libdir MethPed_1.6.0.tar.gz >MethPed.Rcheck\00install.out 2>&1 && cp MethPed.Rcheck\00install.out MethPed-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=MethPed.buildbin-libdir --install="check:MethPed-install.out" --force-multiarch --no-vignettes --timings MethPed_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/MethPed.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'MethPed/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MethPed' version '1.6.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MethPed' can be installed ... OK * checking installed package size ... NOTE installed size is 9.8Mb sub-directories of 1Mb or more: R 2.3Mb data 6.7Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 3 marked Latin-1 strings * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed MethPed 100.00 0.38 100.40 summary.methped 33.50 0.14 33.64 plot.methped 31.48 0.10 31.60 probeMis 30.63 0.11 30.75 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed MethPed 94.98 0.31 95.32 plot.methped 29.37 0.13 29.50 summary.methped 28.10 0.17 28.28 probeMis 27.89 0.17 28.06 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/MethPed.Rcheck/00check.log' for details.
MethPed.Rcheck/00install.out
install for i386 * installing *source* package 'MethPed' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'MethPed' finding HTML links ... done MethPed html MethPed_900probes html MethPed_sample html checkNA html plot.methped html probeMis html summary.methped html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'MethPed' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'MethPed' as MethPed_1.6.0.zip * DONE (MethPed) In R CMD INSTALL In R CMD INSTALL
MethPed.Rcheck/examples_i386/MethPed-Ex.timings
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MethPed.Rcheck/examples_x64/MethPed-Ex.timings
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