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INSTALL report for sevenC on tokay2

This page was generated on 2018-10-17 08:45:46 -0400 (Wed, 17 Oct 2018).

Package 1357/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sevenC 1.0.0
Jonas Ibn-Salem
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/sevenC
Branch: RELEASE_3_7
Last Commit: 46d1c9d
Last Changed Date: 2018-04-30 10:35:51 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: sevenC
Version: 1.0.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/sevenC_1.0.0.tar.gz && rm -rf sevenC.buildbin-libdir && mkdir sevenC.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sevenC.buildbin-libdir sevenC_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL sevenC_1.0.0.zip && rm sevenC_1.0.0.tar.gz sevenC_1.0.0.zip
StartedAt: 2018-10-16 20:12:39 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:14:02 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 83.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/sevenC_1.0.0.tar.gz && rm -rf sevenC.buildbin-libdir && mkdir sevenC.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sevenC.buildbin-libdir sevenC_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL sevenC_1.0.0.zip && rm sevenC_1.0.0.tar.gz sevenC_1.0.0.zip
###
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100 1736k  100 1736k    0     0  24.7M      0 --:--:-- --:--:-- --:--:-- 27.3M

install for i386

* installing *source* package 'sevenC' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sevenC'
    finding HTML links ... done
    TFspecificModels                        html  
    addCor                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/addCor.Rd:10: file link 'GInteractions' in package 'InteractionSet' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/addCor.Rd:23: file link 'GInteractions' in package 'InteractionSet' does not exist and so has been treated as a topic
    addCovCor                               html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/addCovCor.Rd:11: file link 'GInteractions' in package 'InteractionSet' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/addCovCor.Rd:34: file link 'GInteractions' in package 'InteractionSet' does not exist and so has been treated as a topic
    addCovToGR                              html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/addCovToGR.Rd:5: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/addCovToGR.Rd:31: file link 'NumericList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/addCovToGR.Rd:33: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/addCovToGR.Rd:36: file link 'NumericList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/addCovToGR.Rd:10: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/addCovToGR.Rd:26: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/addCovToGR.Rd:28: file link 'NumericList' in package 'IRanges' does not exist and so has been treated as a topic
    addInteractionSupport                   html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/addInteractionSupport.Rd:16: file link 'overlapsAny' in package 'IRanges' does not exist and so has been treated as a topic
    addMotifScore                           html  
    addStrandCombination                    html  
    cutoffBest10                            html  
    cutoffByTF                              html  
    getCisPairs                             html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/getCisPairs.Rd:6: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/getCisPairs.Rd:11: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/getCisPairs.Rd:19: file link 'GInteractions' in package 'InteractionSet' does not exist and so has been treated as a topic
    getOutOfBound                           html  
    modelBest10Avg                          html  
    motif.hg19.CTCF                         html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/motif.hg19.CTCF.Rd:7: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    motif.hg19.CTCF.chr22                   html  
    motif.hg19.CTCF.chr22.cov               html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/motif.hg19.CTCF.chr22.cov.Rd:15: file link 'NumericList' in package 'IRanges' does not exist and so has been treated as a topic
    noZeroVar                               html  
    parseLoopsRao                           html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/parseLoopsRao.Rd:6: file link 'GInteractions' in package 'InteractionSet' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/parseLoopsRao.Rd:21: file link 'GInteractions' in package 'InteractionSet' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/parseLoopsRao.Rd:14: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    parseLoopsTang                          html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/parseLoopsTang.Rd:13: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    predLogit                               html  
    predLoops                               html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/predLoops.Rd:39: file link 'GInteractions' in package 'InteractionSet' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/predLoops.Rd:11: file link 'GInteractions' in package 'InteractionSet' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/predLoops.Rd:35: file link 'GInteractions' in package 'InteractionSet' does not exist and so has been treated as a topic
    prepareCisPairs                         html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/prepareCisPairs.Rd:5: file link 'GInteractions' in package 'InteractionSet' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/prepareCisPairs.Rd:25: file link 'GInteractions' in package 'InteractionSet' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/prepareCisPairs.Rd:11: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpG05MlQ/R.INSTALL1c5c406f707e/sevenC/man/prepareCisPairs.Rd:21: file link 'GInteractions' in package 'InteractionSet' does not exist and so has been treated as a topic
    sevenC                                  html  
    slideMean                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'sevenC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sevenC' as sevenC_1.0.0.zip
* DONE (sevenC)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'sevenC' successfully unpacked and MD5 sums checked
In R CMD INSTALL