Beth Signal
| Snapshot Date: 2025-07-27 13:25 -0400 (Sun, 27 Jul 2025) |
| git_url: https://git.bioconductor.org/packages/GeneStructureTools |
| git_branch: devel |
| git_last_commit: 6d9702f |
| git_last_commit_date: 2025-04-15 11:19:16 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-07-28 12:13 -0400 (Mon, 28 Jul 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4796 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4536 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4578 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4519 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4512 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 815/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GeneStructureTools 1.29.0 (landing page) Beth Signal
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the GeneStructureTools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneStructureTools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: GeneStructureTools |
| Version: 1.29.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GeneStructureTools |
| StartedAt: 2025-07-25 00:47:57 -0000 (Fri, 25 Jul 2025) |
| EndedAt: 2025-07-25 00:47:58 -0000 (Fri, 25 Jul 2025) |
| EllapsedTime: 1.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GeneStructureTools
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* checking for file ‘GeneStructureTools/DESCRIPTION’ ... OK
* preparing ‘GeneStructureTools’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
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ERROR: dependency ‘BSgenome.Mmusculus.UCSC.mm10’ is not available for package ‘GeneStructureTools’
Perhaps try a variation of:
install.packages('BSgenome.Mmusculus.UCSC.mm10')
* removing ‘/home/biocbuild/tmp/RtmpJn3Mx9/Rinst11c5ddda99ffd/GeneStructureTools’
-----------------------------------
ERROR: package installation failed