Multiple platform build/check report for BioC 3.22 - BUILD results for recount3 on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4818
palomino8	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4553
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4595
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4537
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4532
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for recount3 on palomino8

To the developers/maintainers of the recount3 package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/recount3.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: recount3

Version: 1.19.2

Command: chmod a+r recount3 -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data recount3

StartedAt: 2025-08-10 21:35:45 -0400 (Sun, 10 Aug 2025)

EndedAt: 2025-08-10 21:51:55 -0400 (Sun, 10 Aug 2025)

EllapsedTime: 970.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r recount3 -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data recount3
###
##############################################################################
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* checking for file 'recount3/DESCRIPTION' ... OK
* preparing 'recount3':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'recount3-quickstart.Rmd' using rmarkdown

Quitting from recount3-quickstart.Rmd:248-259 [human_projects]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! invalid 'description' argument
---
Backtrace:
    ▆
 1. └─recount3::available_projects()
 2.   └─recount3::available_samples(...)
 3.     └─base::lapply(local_files, utils::read.delim, sep = "\t", check.names = FALSE)
 4.       └─utils (local) FUN(X[[i]], ...)
 5.         └─utils::read.table(...)
 6.           └─base::file(file, "rt")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'recount3-quickstart.Rmd' failed with diagnostics:
invalid 'description' argument
--- failed re-building 'recount3-quickstart.Rmd'

SUMMARY: processing the following file failed:
  'recount3-quickstart.Rmd'

Error: Vignette re-building failed.
Execution halted