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This page was generated on 2025-08-04 12:13 -0400 (Mon, 04 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4796
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4536
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4578
kjohnson3macOS 13.7.1 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4519
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4517
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2265/2313HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
velociraptor 1.19.1  (landing page)
Kevin Rue-Albrecht
Snapshot Date: 2025-08-03 13:25 -0400 (Sun, 03 Aug 2025)
git_url: https://git.bioconductor.org/packages/velociraptor
git_branch: devel
git_last_commit: 7b11f27
git_last_commit_date: 2025-07-08 08:09:03 -0400 (Tue, 08 Jul 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped


BUILD results for velociraptor on taishan

To the developers/maintainers of the velociraptor package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/velociraptor.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: velociraptor
Version: 1.19.1
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor
StartedAt: 2025-08-01 03:42:05 -0000 (Fri, 01 Aug 2025)
EndedAt: 2025-08-01 03:43:08 -0000 (Fri, 01 Aug 2025)
EllapsedTime: 63.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor
###
##############################################################################
##############################################################################


* checking for file ‘velociraptor/DESCRIPTION’ ... OK
* preparing ‘velociraptor’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘velociraptor.Rmd’ using rmarkdown
Requirement already satisfied: pip in /home/biocbuild/.cache/R/basilisk/1.21.5/velociraptor/1.19.1/env/lib/python3.12/site-packages (25.0.1)
Collecting pip
  Using cached pip-25.2-py3-none-any.whl.metadata (4.7 kB)
Collecting wheel
  Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
Collecting setuptools
  Using cached setuptools-80.9.0-py3-none-any.whl.metadata (6.6 kB)
Using cached pip-25.2-py3-none-any.whl (1.8 MB)
Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB)
Installing collected packages: wheel, setuptools, pip
  Attempting uninstall: pip
    Found existing installation: pip 25.0.1
    Uninstalling pip-25.0.1:
      Successfully uninstalled pip-25.0.1
Successfully installed pip-25.2 setuptools-80.9.0 wheel-0.45.1
Collecting ipywidgets==8.1.2
  Using cached ipywidgets-8.1.2-py3-none-any.whl.metadata (2.4 kB)
ERROR: Could not find a version that satisfies the requirement libtiff==4.5.1 (from versions: 0.4.0, 0.4.1, 0.4.2)
ERROR: No matching distribution found for libtiff==4.5.1

Quitting from velociraptor.Rmd:75-82 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Error installing package(s): "'ipywidgets==8.1.2'", "'libtiff==4.5.1'", "'pillow==10.0.0'", "'scipy==1.13.1'", "'scvelo==0.3.3'", "'tqdm==4.66.5'"
---
Backtrace:
     ▆
  1. ├─velociraptor::scvelo(...)
  2. └─velociraptor::scvelo(...)
  3.   └─velociraptor (local) .local(x, ...)
  4.     ├─methods::callNextMethod(x, ..., sf.X = sf.X, dimred = dimred)
  5.     │ └─base::eval(call, callEnv)
  6.     │   └─base::eval(call, callEnv)
  7.     └─velociraptor (local) .nextMethod(x, ..., sf.X = sf.X, dimred = dimred)
  8.       └─velociraptor (local) .local(x, ...)
  9.         └─velociraptor:::.scvelo(...)
 10.           └─basilisk::basiliskRun(...)
 11.             └─basilisk::basiliskStart(...)
 12.               └─basilisk::obtainEnvironmentPath(env)
 13.                 └─basilisk::setupBasiliskEnv(...)
 14.                   └─reticulate::virtualenv_create(...)
 15.                     └─reticulate:::pip_install(python, packages)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'velociraptor.Rmd' failed with diagnostics:
Error installing package(s): "'ipywidgets==8.1.2'", "'libtiff==4.5.1'", "'pillow==10.0.0'", "'scipy==1.13.1'", "'scvelo==0.3.3'", "'tqdm==4.66.5'"
--- failed re-building ‘velociraptor.Rmd’

SUMMARY: processing the following file failed:
  ‘velociraptor.Rmd’

Error: Vignette re-building failed.
Execution halted