Package: cosmoGUI

Version: 1.4.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check cosmoGUI_1.4.0.tar.gz

RetCode: 0

Time: 52.3 seconds

Status: OK

CheckDir: cosmoGUI.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/cosmoGUI.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'cosmoGUI/DESCRIPTION' ... OK
* this is package 'cosmoGUI' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cosmoGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
advanced: no visible binding for '<<-' assignment to 'COSMO.WIDGET'
advancedBuild: no visible binding for '<<-' assignment to
  'COSMO.CONSTRAINTS'
constraintBuilder: no visible binding for global variable
  'COSMO.CONSTRAINTS'
constraintBuilder: no visible binding for '<<-' assignment to
  'COSMO.CONSTRAINTS'
mysample: no visible binding for '<<-' assignment to 'COSMO.WIDGET'
sampleA: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS'
sampleICBound: no visible binding for '<<-' assignment to
  'COSMO.CONSTRAINTS'
sampleICStep: no visible binding for '<<-' assignment to
  'COSMO.CONSTRAINTS'
sampleV: no visible binding for '<<-' assignment to 'COSMO.CONSTRAINTS'
subMotif: no visible binding for '<<-' assignment to
  'COSMO.CONSTRAINTS'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating cosmoGUI-Ex.R ... OK
* checking examples ... OK
* creating cosmoGUI-manual.tex ... OK
* checking cosmoGUI-manual.tex ... OK

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/cosmoGUI.Rcheck


---------- Making package cosmoGUI ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'cosmoGUI'
     Formats: text html latex example chm 
  constraintBuilder                 text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\cosmoGUI.Rcheck\00_pkg_src\cosmoGUI\chm\cosmoGUI.chm


Compile time: 0 minutes, 0 seconds
2	Topics
2	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\cosmoGUI.Rcheck\00_pkg_src\cosmoGUI\chm\cosmoGUI.chm, 16,699 bytes
Compression increased file by 9,078 bytes.
  preparing package cosmoGUI for lazy loading
Loading required package: tkWidgets
Loading required package: widgetTools
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DynDoc
Loading required package: cosmo
Loading required package: seqLogo
Loading required package: grid
  adding MD5 sums

* DONE (cosmoGUI)