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This page was generated on 2025-08-15 12:12 -0400 (Fri, 15 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4818
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4554
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4595
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4537
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4535
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1709/2317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ReactomeGSA 1.23.0  (landing page)
Johannes Griss
Snapshot Date: 2025-08-14 13:45 -0400 (Thu, 14 Aug 2025)
git_url: https://git.bioconductor.org/packages/ReactomeGSA
git_branch: devel
git_last_commit: d9a274e
git_last_commit_date: 2025-04-15 11:49:59 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped


BUILD results for ReactomeGSA on taishan

To the developers/maintainers of the ReactomeGSA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReactomeGSA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: ReactomeGSA
Version: 1.23.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeGSA
StartedAt: 2025-08-15 02:08:28 -0000 (Fri, 15 Aug 2025)
EndedAt: 2025-08-15 02:10:21 -0000 (Fri, 15 Aug 2025)
EllapsedTime: 113.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeGSA
###
##############################################################################
##############################################################################


* checking for file ‘ReactomeGSA/DESCRIPTION’ ... OK
* preparing ‘ReactomeGSA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘analysing-scRNAseq.Rmd’ using rmarkdown

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Quitting from analysing-scRNAseq.Rmd:144-148 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! unable to find an inherited method for function 'pathways' for signature 'x = "NULL"'
---
Backtrace:
    ▆
 1. └─ReactomeGSA::pathways(quant_result)
 2.   └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'analysing-scRNAseq.Rmd' failed with diagnostics:
unable to find an inherited method for function 'pathways' for signature 'x = "NULL"'
--- failed re-building ‘analysing-scRNAseq.Rmd’

--- re-building ‘reanalysing-public-data.Rmd’ using rmarkdown

Quitting from reanalysing-public-data.Rmd:89-94 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `wait_for_loading_dataset()`:
! Request failed (503 - Service Unavailable): Failed to connect to storage system. Please try again in a few minutes.
---
Backtrace:
    ▆
 1. └─ReactomeGSA::load_public_dataset(dataset_search_entry, verbose = TRUE)
 2.   └─ReactomeGSA:::wait_for_loading_dataset(request, verbose, reactome_url)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'reanalysing-public-data.Rmd' failed with diagnostics:
Request failed (503 - Service Unavailable): Failed to connect to storage system. Please try again in a few minutes.
--- failed re-building ‘reanalysing-public-data.Rmd’

--- re-building ‘using-reactomegsa.Rmd’ using rmarkdown

Quitting from using-reactomegsa.Rmd:203-205 [perform_analysis]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `start_reactome_analysis()`:
! Request failed (503 - Service Unavailable): The number of analysis requests is currently too high. Please try again in a few minutes.
---
Backtrace:
    ▆
 1. └─ReactomeGSA::perform_reactome_analysis(...)
 2.   └─ReactomeGSA::start_reactome_analysis(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'using-reactomegsa.Rmd' failed with diagnostics:
Request failed (503 - Service Unavailable): The number of analysis requests is currently too high. Please try again in a few minutes.
--- failed re-building ‘using-reactomegsa.Rmd’

SUMMARY: processing the following files failed:
  ‘analysing-scRNAseq.Rmd’ ‘reanalysing-public-data.Rmd’
  ‘using-reactomegsa.Rmd’

Error: Vignette re-building failed.
Execution halted